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Report for CCDS57490.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57490.1 Public Mus musculus 7 Vmn2r37 23 108 98 CCDS HistoryNCBI Gene:22305Re-query CCDS DB by CCDS ID:57490.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57490.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072787.4 ENSMUSP00000072566.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072787.4Link to Ensembl Protein Viewer:ENSMUSP00000072566.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000072787Re-query CCDS DB by Protein ID:ENSMUSP00000072566
Original member Current member NCBI NM_009489.2 NP_033515.2 Accepted alive Link to Nucleotide Sequence:NM_009489.2Link to Protein Sequence:NP_033515.2Re-query CCDS DB by Nucleotide ID:NM_009489Re-query CCDS DB by Protein ID:NP_033515Link to BLAST:NP_033515.2

Chromosomal Locations for CCDS 57490.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 9206103 9206857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 9209968 9210091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 9215854 9216081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 9217561 9218373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 9220115 9220406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 9223342 9223538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2409 nt):
ATGTTCATTTTCATGGAAGTCTTCTTCCTCCTTAATATTACACTTCTCATGGCCAATTTCATTGATCCCA
GGTGCTTTTGGAGAATAAATTTGGATGAAATAATGGATGAATATTTGGGATTATCTTGTGCTTTCATCCT
GGCAGCAGTTCAGACACCCATTGAAAATGATTATTTCAACAAGACTCTTAATGTTCTAAAAACAACTAAA
AACCACAAATATGCTTTGGCATTGGTGTTTGCAATGGATGAAATCAACAGAAATCCTGATCTTTTACCAA
ATATGTCTTTGATTATAAGATACACTTTGGGCCGTTGTGATGGAAAAACTGTAATACCTACACCATATTT
ATTTCGTAAAAAAAAAGAAAGCCCTATCCCTAATTATTTCTGTAATGAAGAGACTATGTGTTCCTATCTG
CTTACAGGACCCCATTGGGAGGTATCTTTAGGTTTCTGGAAGCACATGAACAGCTTCTTATCTCCACGTA
TCCTTCAGCTTACCTATGGACCTTTCCACTCCATCTTCAGTGATGATGAACAATATCCCTATCTCTATCA
GATGGCCCCAAAGGACACATCTCTAGCATTGGCAATGGTCTCCTTCATACTTTACTTTAGCTGGAACTGG
ATTGGCCTTGTCATTCCAGATGATGACCAAGGAAACCAATTTCTTTTAGAGTTGAAGAAACAGAGTGAAA
ACAAGGAAATTTGCTTTGCCTTTGTGAAAATGATCTCTGTTGATGATGTTTCATTTCCACAAAATACTGA
AATGTACTACAACCAAATTGTGATGTCATCCACAAATGTTATTATCATTTATGGAGAAACATACAATTTC
ATTGATTTGATCTTCAGAATGTGGGAACCTCCCATTTTACAGAGAATATGGATCACCACAAAACAATTGA
ATTTCCCTACCAGGAAAAAAGACATAAGTCATGGCACATTCTATGGATCACTTACTTTTCTACCCCACCA
TGGTGTGATTTCTGGTTTTAAAAATTTTGTACAGACATGGTTCCATCTCAGAAACACAGATTTATATCTA
GTAATGCAAGAGTGGAAATACTTTAACTATGAAGACTCAGCATCTACCTGTAAAATACTGAAGAACAATT
CATCTAATGCCTCATTTGATTGGCTAATGGAACAGAAGTTTGACATGACCTTTAGTGAGAATAGTCATAA
CATATACAATGCTGTGCATGCCATAGCCCATGCCCTCCATGAGATGAATCTGCAACAGGCTGATAATCAG
GCAATAGACAATGGAAAAGGAGCCAGTTCTCACTGCTTGAAGGTAAACTCCTTTCTAAGAAGGATTTACT
TCACTAATCCTCCTGGGGACAAAGTGTTTATGAAGCAAAGAGTAATAATGCACGATGAATATGACATTGT
TCACTTTGTGAATCTCTCACAACACCTTGGGATTAAGATGAAGTTAGGAAAGTTCAGCCCATATTTACCA
CATGGTCGACACTCTCACTTATATGTAGACAGGATTGAGTTGGCCACAGGAAGAAGAAAGATGCCATCCT
CTGTGTGCAGTGCTGATTGTAGTCCTGGATTCAGAAGATTATGGAAGGAGGGAATGGCAGCCTGCTGTTT
TGTTTGCAGCCCCTGCCCTGAAAATGAAATTTCTAATGAGACAACTGTGGTACTTTGTGTCTTTGTGAAG
CATCATGACACTCCTATTGTGAAGGCCAATAACAGAAGCCTCAGCTACCTATTACTCATGTCACTCATGT
CCTGTTTTCTGTGCTCCTTTTTCTTCATTGGCCTTCCAAACAGAGCCATCTGTGTCTTACAGCAAATCAC
ATTTGGAATTGTATTCACTATGGCTGTTTCCACAGTTCTGGCCAAAACAGTCACTGTGGTTCTGGCTTTC
AAAGTCACAGACCCAGGAAGAAGATTGAGAAACTTCCTGGTATCAGGAACACCCAACTACATTATTCCCA
TATGTTCCCTACTCCAATGTGTTCTGTGTGCAATCTGGCTAGCAGTTTCTCCTCCCTTTGTTGATATTGA
TGAACACACTCTCCATGGCCACATCATCATTGTGTGCAACAAGGGCTCAGTTACTGCATTCTACTGTATC
CTAGGATACTTGGCCTGCCTGGCACTTGGAAACTTCTCTGTGGCTTTCTTGGCCAAGAATCTGCCTGACA
CATTCAATGAAGCCAAGTTCTTGACCTTCAGCATGCTAGTGTTCTGTAGTGTCTGGGTCACCTTCCTCCC
TGTCTACCATAGCACCAAGGGCAAACACATGGTTGCTGTGGAGATCTTCTCCATCTTGGCATCCAGTGCT
GGGATCCTTGGATGTATATTTGTACCCAAGATTTATATCATTTTAATGAGACCAGAGAGAAATTCGACCC
AAAAGATCAGGGAAAAATCATATTTCTGA

Translation (802 aa):
MFIFMEVFFLLNITLLMANFIDPRCFWRINLDEIMDEYLGLSCAFILAAVQTPIENDYFNKTLNVLKTTK
NHKYALALVFAMDEINRNPDLLPNMSLIIRYTLGRCDGKTVIPTPYLFRKKKESPIPNYFCNEETMCSYL
LTGPHWEVSLGFWKHMNSFLSPRILQLTYGPFHSIFSDDEQYPYLYQMAPKDTSLALAMVSFILYFSWNW
IGLVIPDDDQGNQFLLELKKQSENKEICFAFVKMISVDDVSFPQNTEMYYNQIVMSSTNVIIIYGETYNF
IDLIFRMWEPPILQRIWITTKQLNFPTRKKDISHGTFYGSLTFLPHHGVISGFKNFVQTWFHLRNTDLYL
VMQEWKYFNYEDSASTCKILKNNSSNASFDWLMEQKFDMTFSENSHNIYNAVHAIAHALHEMNLQQADNQ
AIDNGKGASSHCLKVNSFLRRIYFTNPPGDKVFMKQRVIMHDEYDIVHFVNLSQHLGIKMKLGKFSPYLP
HGRHSHLYVDRIELATGRRKMPSSVCSADCSPGFRRLWKEGMAACCFVCSPCPENEISNETTVVLCVFVK
HHDTPIVKANNRSLSYLLLMSLMSCFLCSFFFIGLPNRAICVLQQITFGIVFTMAVSTVLAKTVTVVLAF
KVTDPGRRLRNFLVSGTPNYIIPICSLLQCVLCAIWLAVSPPFVDIDEHTLHGHIIIVCNKGSVTAFYCI
LGYLACLALGNFSVAFLAKNLPDTFNEAKFLTFSMLVFCSVWVTFLPVYHSTKGKHMVAVEIFSILASSA
GILGCIFVPKIYIILMRPERNSTQKIREKSYF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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