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Report for CCDS39559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39559.1 Public Mus musculus 6 Vmn1r45 23 108 98 CCDS HistoryNCBI Gene:22297Re-query CCDS DB by CCDS ID:39559.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39559.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054202.4 ENSMUSP00000052123.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054202.4Link to Ensembl Protein Viewer:ENSMUSP00000052123.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000054202Re-query CCDS DB by Protein ID:ENSMUSP00000052123
Original member Current member EBI ENSMUST00000227426.1 ENSMUSP00000153735.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227426.1Link to Ensembl Protein Viewer:ENSMUSP00000153735.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227426Re-query CCDS DB by Protein ID:ENSMUSP00000153735
Original member Current member EBI ENSMUST00000227977.1 ENSMUSP00000154708.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227977.1Link to Ensembl Protein Viewer:ENSMUSP00000154708.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227977Re-query CCDS DB by Protein ID:ENSMUSP00000154708
Original member Current member EBI ENSMUST00000228662.1 ENSMUSP00000154795.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228662.1Link to Ensembl Protein Viewer:ENSMUSP00000154795.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228662Re-query CCDS DB by Protein ID:ENSMUSP00000154795
Original member Current member NCBI NM_011684.2 NP_035814.2 Accepted alive Link to Nucleotide Sequence:NM_011684.2Link to Protein Sequence:NP_035814.2Re-query CCDS DB by Nucleotide ID:NM_011684Re-query CCDS DB by Protein ID:NP_035814Link to BLAST:NP_035814.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035814.2 318 Q8VIC7 318 100% 0 0

Chromosomal Locations for CCDS 39559.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 89933030 89933986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGAGTGAGATTCTATTCTTTTCTCCTCAACCACTGTTCTCTCATATGATGAATAAGAACAGCAGACTGC
ACACTCATTCTAACATAAAGAATACCTTTTTCTCTGAAATTGGCATTGGGATCTTAGGCAACAGCTTCCT
TCTTCTCTTTCACATCCTAAAGTTCATTCGTGGACACAGGCTCAGACTCACTGACCTGCCCATTGGTCTC
TTGTCCCTTATCCACTTACTGATGCTACTGCTCATGGCATTCATAGCCACAGATATTTTTATTTCTCGGA
GGGGCTGGGATGACATCATATGTAAATTCCTTGTGTATCTGTACAGAGTTTTGAGGGGCCTCTCCCTTTG
TACCACCAGCATGTTGAGTGTCCTCCAGGCCATCATCCTCAGTCCCAGAAGCTCCTGTTTAGCAAAGCTC
AAGCACAAATATCCCCATCACATCTCCTGTGCCATTATTTTCCTGAGTGTCCTCTATATGTTAATTAGCA
GTCACATCTTGTTATCCATCATTGCTACCCCCAATTTGACCAGGAATGACTTTCTTTATGTTACTCAATC
CTGCTCTATTCTACCCTTGAGTTACGTCATGCAAAGCATGTATTCTACACTGCTGGCCCTCAGGGAAGTC
TTTCTTATTAGTCTCATGGTCCTCTCAACTTTGTACATGGTGGTCCTCTTGTGCAGGCACAGGAAACAGG
CCCAGCATCTTCAAGGTACCAGTCTTTCCCCCAAAGCATCCGCAGAGCAAAGGGCCACCCAGACCATCCT
GATGCTCATGACCTTCTTTGTGCTGATGTCCATCTTTGACAGCATTGTCTCCTGCTCAAGAACTATGTTC
CTGGATGATCCAACATCTTACTCTATCCATATCTTTGTGATGCACATCTATGCCACAGTCAGCCCTTTTG
TGTTTATGAGTACTGAAAAACATATAGTTAACATTTTGAGAGGGTGA

Translation (318 aa):
MSEILFFSPQPLFSHMMNKNSRLHTHSNIKNTFFSEIGIGILGNSFLLLFHILKFIRGHRLRLTDLPIGL
LSLIHLLMLLLMAFIATDIFISRRGWDDIICKFLVYLYRVLRGLSLCTTSMLSVLQAIILSPRSSCLAKL
KHKYPHHISCAIIFLSVLYMLISSHILLSIIATPNLTRNDFLYVTQSCSILPLSYVMQSMYSTLLALREV
FLISLMVLSTLYMVVLLCRHRKQAQHLQGTSLSPKASAEQRATQTILMLMTFFVLMSIFDSIVSCSRTMF
LDDPTSYSIHIFVMHIYATVSPFVFMSTEKHIVNILRG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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