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Report for CCDS15909.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15909.2 Public Mus musculus 2 Uck1 23 108 98 CCDS HistoryNCBI Gene:22245Re-query CCDS DB by CCDS ID:15909.2See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 15909.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15909.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002625.14 ENSMUSP00000002625.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002625.14Link to Ensembl Protein Viewer:ENSMUSP00000002625.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002625Re-query CCDS DB by Protein ID:ENSMUSP00000002625
Original member Current member NCBI NM_011675.2 NP_035805.2 Accepted alive Link to Nucleotide Sequence:NM_011675.2Link to Protein Sequence:NP_035805.2Re-query CCDS DB by Nucleotide ID:NM_011675Re-query CCDS DB by Protein ID:NP_035805Link to BLAST:NP_035805.2

Chromosomal Locations for CCDS 15909.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32256030 32256211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32256618 32256666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32258090 32258184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32258277 32258419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32258571 32258667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32259580 32259739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32259909 32260034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGTCCGTCGCTCCGGATATGGCTTCGGCGGGAGGCGGCGGCTCGGAGAGCGCCGCGCCCGAGGCCGATC
GTCCCCAGCCGCGGCCGTTCCTCATCGGCGTGAGCGGCGGCACCGCTAGTGGCAAGTCAACAGTGTGTGA
GAAGATCATGGAGCTGCTGGGACAGAACGAAGTGGACCGCCGGCAGCGCAAGTTGGTCATCCTGAGCCAG
GACTGCTTCTACAAGGTTCTGACGGCCGAGCAGAAGGCCAAGGCTTTGAAGGGACAGTACAATTTTGACC
ACCCAGATGCTTTTGATAATGATCTGATGCACAAGACCCTGAAAAACATTGTTGAAGGCAAAACTGTCGA
GGTCCCTACCTATGATTTTGTGACCCACTCAAGGTTACCAGAGACCACTGTGGTCTACCCAGCTGATGTG
GTTCTGTTCGAGGGCATCTTGGTATTCTACACCCAGGAGATCCGGGACATGTTCCACCTGCGCCTCTTTG
TGGACACAGACTCTGATGTTAGGCTGTCTCGAAGAGTTCTCCGGGATGTGCAACGAGGAAGGGACCTGGA
GCAGATCCTGACTCAGTACACCGCCTTTGTGAAACCAGCCTTTGAGGAGTTCTGCCTGCCGACTAAGAAG
TACGCTGACGTGATCATCCCTCGAGGAGTTGATAATATGGTGGCCATCAACCTGATCGTGCAACACATCC
AGGACATCCTCAACGGGGACCTGTGCAAGCGGCACCGAGGCGGGCCCAACGGGCGCAACCACAAGAGGAC
CTTCCCCGAGCCAGGAGATCACCCTGGGGTGTTGGCCACTGGCAAGCGCTCACACCTGGAGTCTAGCAGC
AGACCCCATTGA

Translation (283 aa):
MSVAPDMASAGGGGSESAAPEADRPQPRPFLIGVSGGTASGKSTVCEKIMELLGQNEVDRRQRKLVILSQ
DCFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHKTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADV
VLFEGILVFYTQEIRDMFHLRLFVDTDSDVRLSRRVLRDVQRGRDLEQILTQYTAFVKPAFEEFCLPTKK
YADVIIPRGVDNMVAINLIVQHIQDILNGDLCKRHRGGPNGRNHKRTFPEPGDHPGVLATGKRSHLESSS
RPH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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