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Report for CCDS20089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20089.1 Public Mus musculus 6 Or2a7 23 108 98 CCDS HistoryNCBI Gene:18310Re-query CCDS DB by CCDS ID:20089.1Re-query CCDS DB by GeneID:18310See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059512.4 ENSMUSP00000053813.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059512.4Link to Ensembl Protein Viewer:ENSMUSP00000053813.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059512Re-query CCDS DB by Protein ID:ENSMUSP00000053813
Original member Current member EBI ENSMUST00000216179.1 ENSMUSP00000149893.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216179.1Link to Ensembl Protein Viewer:ENSMUSP00000149893.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216179Re-query CCDS DB by Protein ID:ENSMUSP00000149893
Original member Current member NCBI NM_146652.1 NP_666863.1 Accepted alive Link to Nucleotide Sequence:NM_146652.1Link to Protein Sequence:NP_666863.1Re-query CCDS DB by Nucleotide ID:NM_146652Re-query CCDS DB by Protein ID:NP_666863Link to BLAST:NP_666863.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666863.1 310 P34984 310 100% 0 0

Chromosomal Locations for CCDS 20089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 43173988 43174920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGGAAACAATATGACATTAATCACAGAGTTCATCCTCCTGGGATTTCCTCTCAGCCCGAGGATGCAGA
TGCTCCTCTTTGCCCTCTTCTCCCTCTTCTATGCCTTCACCCTGCTGGGGAATGGAACCATCGTGGGGCT
CATCTGCCTGGACTCCAGACTCCACACTCCCATGTACTTCTTCCTGTCTCATCTGGCCATCGTTGACATT
GCCTATGCCTGCAACACAGTGCCCCAGATGCTGGTGAACCTTTTAGATCCAGTGAAGCCCATTTCCTATG
CTGGTTGTATGACACAGACTTTTCTCTTTTTGACATTTGCTATCACAGAATGCCTTCTCCTAGTGGTGAT
GTCCTATGACCGGTATGTTGCAATCTGTCACCCACTCCGTTACTCTGCCATCATGAGCTGGAGAGTTTGC
AGCACCATGGCAGTGACTTCCTGGATTATTGGTGTTCTGCTGTCTTTGATCCACCTCGTGTTACTTTTAC
CCTTACCCTTCTGTGTGTCTCAGAAAGTGAACCACTTTTTCTGTGAAATTACAGCTATCCTCAAACTTGC
CTGTGCAGACACACACCTCAATGAGACGATGGTCCTGGCTGGGGCAGTGTCTGTCCTTGTGGGGCCATTC
TCCTCAATTGTGGTCTCTTATGCATGTATCCTTGGTGCTATCCTGAAGATCCAGTCAGAAGAGGGTCAAA
GGAAAGCCTTTTCCACCTGCTCCTCCCACCTCTGTGTGGTCGGATTGTTTTATGGTACCGCCATTGTCAT
GTACGTTGGACCCAGACACGGGAGCCCAAAGGAGCAGAAGAAATATCTTTTGCTGTTTCACAGTCTTTTT
AACCCTATGCTCAACCCCTTGATCTATAGTCTCAGGAATTCTGACGTGAAGAATACATTGAAAAGAGTGC
TGAGGACACAGAGAGCTTTGTGA

Translation (310 aa):
MGNNMTLITEFILLGFPLSPRMQMLLFALFSLFYAFTLLGNGTIVGLICLDSRLHTPMYFFLSHLAIVDI
AYACNTVPQMLVNLLDPVKPISYAGCMTQTFLFLTFAITECLLLVVMSYDRYVAICHPLRYSAIMSWRVC
STMAVTSWIIGVLLSLIHLVLLLPLPFCVSQKVNHFFCEITAILKLACADTHLNETMVLAGAVSVLVGPF
SSIVVSYACILGAILKIQSEEGQRKAFSTCSSHLCVVGLFYGTAIVMYVGPRHGSPKEQKKYLLLFHSLF
NPMLNPLIYSLRNSDVKNTLKRVLRTQRAL


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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