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Report for CCDS24313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24313.1 Public Mus musculus 10 Or6c68 23 108 98 CCDS HistoryNCBI Gene:258281Re-query CCDS DB by CCDS ID:24313.1Re-query CCDS DB by GeneID:258281See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24313.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063168.2 ENSMUSP00000054927.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063168.2Link to Ensembl Protein Viewer:ENSMUSP00000054927.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000063168Re-query CCDS DB by Protein ID:ENSMUSP00000054927
Original member Current member EBI ENSMUST00000215503.1 ENSMUSP00000149258.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215503.1Link to Ensembl Protein Viewer:ENSMUSP00000149258.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215503Re-query CCDS DB by Protein ID:ENSMUSP00000149258
Original member Current member NCBI NM_146284.1 NP_666396.1 Accepted alive Link to Nucleotide Sequence:NM_146284.1Link to Protein Sequence:NP_666396.1Re-query CCDS DB by Nucleotide ID:NM_146284Re-query CCDS DB by Protein ID:NP_666396Link to BLAST:NP_666396.1

Chromosomal Locations for CCDS 24313.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 129321625 129322563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGAGAAACCACACTTCAATTACAACATTCATCCTCCTGGGACTCACTGATGATCCTCAGCTGCAGGTCT
TGCTTTTTATTTTTCTATTTATCACCTACCTATTGAGTGTAACTGGTAACTTAACTATCATTACCCTCAC
TACAGTGGATCCCTACCTTAAAACTCCAATGTATTTCTTCCTCCAAAATTTCTCTTTCCTAGAAATCTCA
TTTACAAGTGCCTGTGTCCCAAGATTCTTATACAGTATTTCAACTGGAGACAGAACAATTACATACAATG
CATGTGCAACTCAACTATTTTTTACAGATCTCTTTGGGGTAACTGAATTTTTTCTTCTGGCTATCATGTC
ATATGACCGCTACGTGGCCATCTGTAAACCTTTGCATTATATGACCATCATGAACAACAAGGTGTGCAGA
ATAATGGTTATCTCCTGTTGGATGGCAGCATTCATGATTATCCTCCCACCCCTGAGTTTGGGGTTTCACC
TGGAATTCTGTGACTCTAATATCATTGATCATTTTGGATGTGATGCAAACCCTATTTTGAAAATATCGTG
CTCAGACACGTGGTTAATTGAGCAGATGGTAATAGGCTCGGCAGTATTGACCTTCATCATTACTCTTCTA
TGTGTAGTCTTTTCATACATGTACATCATAAGGACAGTTCTAAAATTCCCTTCTGCCCAACAAAAGAGAA
AGGCCTTTTCTACCTGCTCTTCACACATGATTGTGGTTTCCATCACCTATGGCAGCTGCATCTTCATCTA
CGTCAAACCGTCTGCAAAAGAAGCGGTGACCATTAATAAAGGTGTGTCTGTGCTTATTTCTTCCATATCA
CCCATGCTGAATCCTTTCATATATACTCTAAGGAACAAGCAAGTTAAACAAGCTTCTCAGGACTTAATTA
AGAAAATTGCATTTCTCTTAAAGAAGTGA

Translation (312 aa):
MRNHTSITTFILLGLTDDPQLQVLLFIFLFITYLLSVTGNLTIITLTTVDPYLKTPMYFFLQNFSFLEIS
FTSACVPRFLYSISTGDRTITYNACATQLFFTDLFGVTEFFLLAIMSYDRYVAICKPLHYMTIMNNKVCR
IMVISCWMAAFMIILPPLSLGFHLEFCDSNIIDHFGCDANPILKISCSDTWLIEQMVIGSAVLTFIITLL
CVVFSYMYIIRTVLKFPSAQQKRKAFSTCSSHMIVVSITYGSCIFIYVKPSAKEAVTINKGVSVLISSIS
PMLNPFIYTLRNKQVKQASQDLIKKIAFLLKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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