NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, December 17, 2024, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17850.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17850.1 Public Mus musculus 3 Ppa2 23 108 98 CCDS HistoryNCBI Gene:74776Re-query CCDS DB by CCDS ID:17850.1Re-query CCDS DB by GeneID:74776See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17850.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029644.15 ENSMUSP00000029644.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029644.15Link to Ensembl Protein Viewer:ENSMUSP00000029644.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000029644Re-query CCDS DB by Protein ID:ENSMUSP00000029644
Original member Current member NCBI NM_146141.2 NP_666253.1 Accepted alive Link to Nucleotide Sequence:NM_146141.2Link to Protein Sequence:NP_666253.1Re-query CCDS DB by Nucleotide ID:NM_146141Re-query CCDS DB by Protein ID:NP_666253Link to BLAST:NP_666253.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666253.1 330 Q91VM9-1 330 100% 0 0

Chromosomal Locations for CCDS 17850.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 133310140 133310281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133320936 133321000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133322572 133322616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133326648 133326701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133330393 133330512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133339263 133339349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133348064 133348190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133367823 133367950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133370380 133370465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133373623 133373692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133376549 133376588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 133377847 133377875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (993 nt):
ATGCGCGCGCTGCTGCCGCTGCTGAGCGTCGGCCGAGGGTGGCGCGTGGGGGCCGCCGCCCGCCCTCCGC
GCCGCGTCATGTCCCTGTACCGCACGGAGGAGCTGGGCCATCCCCGCTCGCAGGACTACCGCCTGTTCTT
CAAGCATGTAGCTGGTCATTACATCTCCCCTTTCCACGACATTCCTCTGAAGGCGGACTGTAAAGAGGAA
CATGACATTCCCAGGAAAAAGGCACGAAATGATGAATATGAGAATTTGTTTAATATGGTTGTGGAAATAC
CTCGGTGGACAAATGCCAAGATGGAGATTGCCACAGAGGAGCCACTCAATCCCATTAAGCAAGATATAAA
GAACGGAAAGCTACGCTACACACCGAACATCTTCCCTCACAAGGGCTATATATGGAATTACGGGGCCCTC
CCTCAGACCTGGGAAGATCCTCACCTAAGAGATAAGAGCACCGACTGCTGTGGGGATAATGATCCCATTG
ACGTCTGTGAAATAGGCTCAAAGGTTCTTTCCCGTGGAGACGTGGTCCATGTGAAGATCCTTGGGACTTT
GGCACTTATTGATCAGAGTGAAACAGATTGGAAAATAATTGCTATCAATGTGAATGATCCTGAGGCTGAA
AAATTTCATGATATTGATGATGTTAAGAAGTTCAAACCAGGTTACCTGGAAGCCACTCTCAATTGGTTTA
GACTCTATAAGGTACCAGATGGAAAACCAGAAAACAAGTTTGCTTTTAATGGAGAATTCAAAAACAAGGC
TTTCGCCCTCGACGTTATTAACTCTGCACATGAACGTTGGAAAGAGATGGTTATGAAGAAGTGTGACAAG
GGAGCCATCAGTTGTGTAAATGTGCACATCTGCGATAGCCCTTTCCACTGCACTATGGAGGAAGCAAGAT
CATTGGTTGAATCGGTTCCAACACCTTCGATGAATAAGGAAAGCAATGTAGAGGAAGAAGTGTGGCACTT
CCTCCGCAACTGA

Translation (330 aa):
MRALLPLLSVGRGWRVGAAARPPRRVMSLYRTEELGHPRSQDYRLFFKHVAGHYISPFHDIPLKADCKEE
HDIPRKKARNDEYENLFNMVVEIPRWTNAKMEIATEEPLNPIKQDIKNGKLRYTPNIFPHKGYIWNYGAL
PQTWEDPHLRDKSTDCCGDNDPIDVCEIGSKVLSRGDVVHVKILGTLALIDQSETDWKIIAINVNDPEAE
KFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPENKFAFNGEFKNKAFALDVINSAHERWKEMVMKKCDK
GAISCVNVHICDSPFHCTMEEARSLVESVPTPSMNKESNVEEEVWHFLRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH