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Report for CCDS30540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30540.1 Public Mus musculus Y Uba1y 23 108 98 CCDS HistoryNCBI Gene:22202Re-query CCDS DB by CCDS ID:30540.1See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30540.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115894.2 ENSMUSP00000111560.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115894.2Link to Ensembl Protein Viewer:ENSMUSP00000111560.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115894Re-query CCDS DB by Protein ID:ENSMUSP00000111560
Original member Current member EBI ENSMUST00000190013.6 ENSMUSP00000140543.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000190013.6Link to Ensembl Protein Viewer:ENSMUSP00000140543.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000190013Re-query CCDS DB by Protein ID:ENSMUSP00000140543
Original member Current member NCBI NM_001357043.1 NP_001343972.1 Accepted alive Link to Nucleotide Sequence:NM_001357043.1Link to Protein Sequence:NP_001343972.1Re-query CCDS DB by Nucleotide ID:NM_001357043Re-query CCDS DB by Protein ID:NP_001343972Link to BLAST:NP_001343972.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343972.1 1058 P31254 1058 100% 0 0

Chromosomal Locations for CCDS 30540.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome Y (NC_000087.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 820821 820937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 821052 821107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 821192 821360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 821450 821584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 822146 822252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 822459 822549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 823144 823276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 825448 825545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 825642 825788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 825899 826075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 826178 826282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 826371 826451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 826762 826917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 828766 828931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 829141 829337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 831259 831323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 831575 831770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 832324 832398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 832504 832696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 834175 834263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 841968 842060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 842180 842371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 842924 843025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 843134 843234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 843387 843522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3177 nt):
ATGTCCAGCTCAGTCCTGTCCAAGAAACGCAAAGTGTCTGGACCTGACTCTAGTCTGGATTCTAGTTGGT
CTCCTACCTATTCTGTGATGTTTGGCGTGCCCCCAGGGCCAACCAACGAAATGTCAAAAAATAAGGAAAT
GGACATAGATGAAAGCCTTTACTCCCGCCAGCTGTATGTACTCGGCCATGAGGCAATGAAGCATCTCCAG
GCTTCCAGTGTACTGATATCAGGCCTGCAGGGTCTGGGTGTGGAAATTGCCAAGAATATCATCCTTGGTG
GGGTCAAGGCTGTCACTCTCCATGATCAGGGCATTGCCCAGTGGGCTGATCTGTCTTCCCAGTTCTGCCT
ACGTGAGGAAGATATTGGTAAAAACCGAGCTGAGATATCCCAACCACGCCTTGCTGAACTCAACAGTTAC
GTTCCTGTGTTTGCCTACACTGGACCTCTAATTGAGGAGTTCCTTAGTGGTTTTCAGGTAGTGGTTCTTA
CCAACACTCCTTTGGAATATCAGCTGCAGGTGGGTGAATTCTGCCATAGCCACGGAATCAAGCTGGTAGT
AGCAGACACTCGGGGCCTAGTTGGACAACTCTTCTGTGACTTTGGAGAGGAAATGATTCTCACTGATTCA
AATGGAGAACAGCCACTCAGTGCCATGGTTTCAATGATCACTAAGGAGAATCCAGGGATTGTCACCTGCC
TGGAGGACTCCCGGCATGGATTTGAAAGTGGTGACTTTATCTCTTTCACAGAAGTTCAGGGCATGAGTGA
ACTCAATGGCATTGGTCCCATAGAGATCAAAGTTCTGGGTCCCTATACCTTTAGTATCTGTGATACCTCC
AGCTTCTCTGAGTACATCCGTGGAGGCATTGTCAGTCAAGTGAAAGTACCTCGGAAGATCAATTTTAAAC
CCCTACTTGCCTCGCTGGCAGAGCCAGAGTTTGTGGTCACAGATTTTGCTAAGTGCTGTCATCCTGCTCA
GCTCCACATTGGCTTCCAGGCCCTGCATCAGTTCTGTACTCAGCACAGCAGGCCTCCTCGGCCCCATAAT
GAGGAGGATGCTGAGGAATTGGTGACCTTAGCCCAATCTGTGAATGCTCAAGCTTTGCCAGCAGTTCAGC
AGGATTGCCTGGACATCGACCTTATCCGGAAGTTGGCCTATGTAGCAGCTGGGGACCTGGCACCCATGAA
TGCCTTTTTTGGTGGTTTGGCTGCCCAGGAGGTCATGAAGGCTTGTTCTGGAAAGTTTATGCCCATTAGG
CAGTGGCTGTACTTTGATGCCCTTGAATGTCTCCCAGAGCACAGAGTGGCCTTCATGGAAGATAAGTGCC
TGCCACACCAGAACCGTTATGATGGGCAAGTGGCTGTATTTGGATCAGACCTACAAGAGAAGCTTGGCAA
GCAGAAATACTTCCTGGTAGGTGCAGGTGCCATTGGCTGTGAGCTGCTCAAGAACTTTGCCATGATTGGC
CTCGGCTGTGGGGAGGATGGAGAAATCACAGTTACAGACATGGACACCATTGAGAAGTCAAACCTGAACA
GGCAGTTTCTCTTCCGTCCCTGGGACATCACAAAATTAAAGTCTGAGACTGCTGCTGCAGCAGTGCGTGA
CATAAATCCACACATCAGGATATTCAGCCACCAGAATCGAGTAGGCCCAGAGACAGAACACGTCTATGAT
GATGACTTCTTCCAAAAGCTGGATGGTGTGGCCAATGCCCTAGACAATGTGGATGCTCGATTATACGTGG
ACCGCCGTTGTGTTTACTATCGTAAGCCTCTGCTGGAATCAGGCACGCTGGGCACCAAGGGCAACGTGCA
GGTGGTTGTTCCCTTCTTGACAGAATCTTACAGCTCAAGCCAGGACCCACCTGAGAAATCCATCCCCATC
TGCACACTGAAGAACTTCCCTAATGCCATTGAGCACACCGTGCAGTGGGCTCGGGATGAGTTTGAAGGGC
TCTTCAAGCAGTCAGCTGAAAATGTTAACCAATACCTCACGGACCCCAAGTTCATGGAGCGGACACTGCA
GCTAGCCGGCACCCAGCCTTTGGAAGTACTGGAGGCCATACACTGCAGCCTGGTCCTGCAGAGGCCACAG
ACTTGGGCCGACTGTGTGACTTGGGCCTACCAGCACTGGCACACCCAGTATTCTCACAACATCCAGCAGT
TGCTGCACAACTTCCCTCCAGCACAGCTTACGAGCTCTGGAGCACTTTTTTGGTCAGGACCAAAACGCTG
TCCACATCCTCTCACCTTTGACATAAACAATCCCCTGCATCTGGATTATGTGATGGCTGCTGCCAACCTG
TTTGCTCAGACATACGGACTAGGAGGGTCCCAGGACTGTGCTGTGGTGGCCAAACTCCTGCAGTCTCTGC
CAGTCCCCAAGTTTGCTCCCAAGTCTGGCATCAGGATCCATGTTTCTGAGCAGGAGCTGCAGAGTACCAG
TGCCACCACCATTGATGACAGCCACCTGGAGGAACTCAAGACTGCACTTCCTACTCCAGACAAGCTGCTT
GGATTCAAGATGTACCCCATTGACTTTGAGAAGGATGACGACAGCAACTTTCACATGGATTTCATTGTGG
CAGCATCCAACCTCCGAGCAGAAAACTATGGCATTTCCCCAGCAGACCGGCATAAGAGCAAACTGATTGC
AGGCAAGATCATCCCAGCCATTGCAACCACCACATCTGCTATAGTTGGCCTTGTGTGTCTGGAGCTGTAC
AAGGTGGTTCAGGGCCACCAACAACTGGAGTCTTATAAAAACAGTTTTATCAACTTGGCTCTGCCTTTGT
TTAGCTTTTCTGCACCTCTGGCTCCAGAGTGTCATCAGTACTATGATCAAGAGTGGACACTGTGGGATCG
CTTTGATGTGCAAGGACTGCAACCTAGCGGTGAGGAGATGACCTTGAAGCAGTTTCTAGACTACTTTAAG
ACAGAGCACAAGCTGGAAGTCATCATGCTGTCCCAGGGTGTGTCCATGCTCTATTCTGTCTTTATGCCAG
CCAGCAAGCTCAAAGAACGGTTGGATCAGCCGATGACAGAGATTGTGAGCTGTGTGTCAAAGCAAAAACT
GGGCCATCATGTGAAGTCACTTGTGTTTGAGCTGTGCTGCAACAGTGACAGTGGAGACGACATAGAGGTT
CCTTATGTACGATACATCATCCGCTGA

Translation (1058 aa):
MSSSVLSKKRKVSGPDSSLDSSWSPTYSVMFGVPPGPTNEMSKNKEMDIDESLYSRQLYVLGHEAMKHLQ
ASSVLISGLQGLGVEIAKNIILGGVKAVTLHDQGIAQWADLSSQFCLREEDIGKNRAEISQPRLAELNSY
VPVFAYTGPLIEEFLSGFQVVVLTNTPLEYQLQVGEFCHSHGIKLVVADTRGLVGQLFCDFGEEMILTDS
NGEQPLSAMVSMITKENPGIVTCLEDSRHGFESGDFISFTEVQGMSELNGIGPIEIKVLGPYTFSICDTS
SFSEYIRGGIVSQVKVPRKINFKPLLASLAEPEFVVTDFAKCCHPAQLHIGFQALHQFCTQHSRPPRPHN
EEDAEELVTLAQSVNAQALPAVQQDCLDIDLIRKLAYVAAGDLAPMNAFFGGLAAQEVMKACSGKFMPIR
QWLYFDALECLPEHRVAFMEDKCLPHQNRYDGQVAVFGSDLQEKLGKQKYFLVGAGAIGCELLKNFAMIG
LGCGEDGEITVTDMDTIEKSNLNRQFLFRPWDITKLKSETAAAAVRDINPHIRIFSHQNRVGPETEHVYD
DDFFQKLDGVANALDNVDARLYVDRRCVYYRKPLLESGTLGTKGNVQVVVPFLTESYSSSQDPPEKSIPI
CTLKNFPNAIEHTVQWARDEFEGLFKQSAENVNQYLTDPKFMERTLQLAGTQPLEVLEAIHCSLVLQRPQ
TWADCVTWAYQHWHTQYSHNIQQLLHNFPPAQLTSSGALFWSGPKRCPHPLTFDINNPLHLDYVMAAANL
FAQTYGLGGSQDCAVVAKLLQSLPVPKFAPKSGIRIHVSEQELQSTSATTIDDSHLEELKTALPTPDKLL
GFKMYPIDFEKDDDSNFHMDFIVAASNLRAENYGISPADRHKSKLIAGKIIPAIATTTSAIVGLVCLELY
KVVQGHQQLESYKNSFINLALPLFSFSAPLAPECHQYYDQEWTLWDRFDVQGLQPSGEEMTLKQFLDYFK
TEHKLEVIMLSQGVSMLYSVFMPASKLKERLDQPMTEIVSCVSKQKLGHHVKSLVFELCCNSDSGDDIEV
PYVRYIIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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