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Report for CCDS27997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27997.1 Public Mus musculus 16 Ube2l3 23 108 98 CCDS HistoryNCBI Gene:22195Re-query CCDS DB by CCDS ID:27997.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27997.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090192.11 ENSMUSP00000087658.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090192.11Link to Ensembl Protein Viewer:ENSMUSP00000087658.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090192Re-query CCDS DB by Protein ID:ENSMUSP00000087658
Original member Current member EBI ENSMUST00000232139.1 ENSMUSP00000156121.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232139.1Link to Ensembl Protein Viewer:ENSMUSP00000156121.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232139Re-query CCDS DB by Protein ID:ENSMUSP00000156121
Original member NCBI NM_009456.2 NP_033482.1 Updated not alive Link to Nucleotide Sequence:NM_009456.2Link to Protein Sequence:NP_033482.1Re-query CCDS DB by Nucleotide ID:NM_009456Re-query CCDS DB by Protein ID:NP_033482
Current member NCBI NM_009456.3 NP_033482.1 Accepted alive Link to Nucleotide Sequence:NM_009456.3Link to Protein Sequence:NP_033482.1Re-query CCDS DB by Nucleotide ID:NM_009456Re-query CCDS DB by Protein ID:NP_033482Link to BLAST:NP_033482.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033482.1 154 P68037 154 100% 0 0

Chromosomal Locations for CCDS 27997.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17154128 17154282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17159990 17160176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17176412 17176507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 17201435 17201461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (465 nt):
ATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAGATCCGCAAATGTGGAATGAAAAACTTCCGTA
ACATCCAGGTTGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCCATATGA
TAAGGGAGCCTTCAGAATTGAAATCAACTTTCCAGCAGAGTATCCATTCAAACCACCCAAGATCACATTT
AAAACAAAGATCTACCACCCTAACATCGATGAGAAGGGGCAGGTCTGTCTGCCAGTCATTAGTGCTGAAA
ACTGGAAGCCAGCCACCAAGACTGACCAAGTAATCCAGTCCCTCATAGCACTGGTGAATGACCCCCAGCC
TGAGCACCCACTCCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTAAAAAATTCTGTAAGAATGCT
GAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCTGTGGACTAA

Translation (154 aa):
MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITF
KTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNA
EEFTKKYGEKRPVD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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