NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57479.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57479.1 Public Mus musculus 7 Or6z7 23 108 98 CCDS HistoryNCBI Gene:18349Re-query CCDS DB by CCDS ID:57479.1Re-query CCDS DB by GeneID:18349See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57479.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086318.4 ENSMUSP00000083498.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086318.4Link to Ensembl Protein Viewer:ENSMUSP00000083498.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000086318Re-query CCDS DB by Protein ID:ENSMUSP00000083498
Original member Current member EBI ENSMUST00000209866.3 ENSMUSP00000147586.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000209866.3Link to Ensembl Protein Viewer:ENSMUSP00000147586.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000209866Re-query CCDS DB by Protein ID:ENSMUSP00000147586
Original member Current member NCBI NM_146914.2 NP_667125.1 Accepted alive Link to Nucleotide Sequence:NM_146914.2Link to Protein Sequence:NP_667125.1Re-query CCDS DB by Nucleotide ID:NM_146914Re-query CCDS DB by Protein ID:NP_667125Link to BLAST:NP_667125.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_667125.1 312 Q60889 312 100% 0 0

Chromosomal Locations for CCDS 57479.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6480216 6481154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAGAGGTCCCTGGCGTTGGCCAACATGACCAGGGTTCAGCAGTTCATCTTGCTGGGATTGTCCACTA
GGCTGGACATAAGGGATGCCCTATTTGCTGTCTTCCTGACTCTCTACCTGCTGACCCTCCTGGAGAACAC
ACTCATCATCTACCTCATCTGCAGTCACAAAGAGCTCCACAAGCCCATGTACTTCTTCTTGGGCAACCTC
AGCTGCCTGGAGATGTGCTATGTGTCAGTCACCATGCCCACCTTACTCATGGGGCTATGGAATGGACTCT
ACCATATTCCCTTCATAGCTTGTATGACCCAACTCTTCTTCTTCATTGTCCTTGTGGGCACAGAGTGCAT
TCTTTTGGCATCCATGGCGTATGATCGCTATGTGGCCATCTGCCGCCCACTACACTACCCAGTACTCATG
AGGCCCCAGGTCTGCCTGGGCTTGGCTATGATTTCATGGCTAGGTGGGCTATTGGTTTCTATGATCAAGA
CAACATGCATTGCCACCCTGTCCTACTGTGGCCCCAATGTCCTCAACCATTTTTTCTGTGATGTTTCCCC
ATTACTCAACCTGTCATGTACCCATGTGGCCCTCACAGAGCTGGTAGACTTCATCTCAGCCATTGTCATC
CTTTGGGGTTGCTTCCTCACGACTATGGCCTCCTATGTGGCTATTGGCAGGGCAGTTCTGCGCATGCCTT
CTACCACTGCCCGCTACAAGGCCTTCTCTACCTGTGCCTCCCACCTGGTCGTGGTGGGCATCTTCTACTC
AGTCACTATCTTCATCTATGCCCGCCCCAAACGCATAGAAGCCATGGATCTCAACAAGGTGCTGTCTGTC
ATCTATACAGTGGTCACCCCCATGTGCAACCCAGTTATCTACTGTCTGCGGAACAAGGAGGTCCAAGTAG
CTCTTCACAGAACCATGCACTGGTCCTGA

Translation (312 aa):
MERSLALANMTRVQQFILLGLSTRLDIRDALFAVFLTLYLLTLLENTLIIYLICSHKELHKPMYFFLGNL
SCLEMCYVSVTMPTLLMGLWNGLYHIPFIACMTQLFFFIVLVGTECILLASMAYDRYVAICRPLHYPVLM
RPQVCLGLAMISWLGGLLVSMIKTTCIATLSYCGPNVLNHFFCDVSPLLNLSCTHVALTELVDFISAIVI
LWGCFLTTMASYVAIGRAVLRMPSTTARYKAFSTCASHLVVVGIFYSVTIFIYARPKRIEAMDLNKVLSV
IYTVVTPMCNPVIYCLRNKEVQVALHRTMHWS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH