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Report for CCDS39647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39647.1 Public Mus musculus 6 Tulp3 23 108 98 CCDS HistoryNCBI Gene:22158Re-query CCDS DB by CCDS ID:39647.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001562.8 ENSMUSP00000001562.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001562.8Link to Ensembl Protein Viewer:ENSMUSP00000001562.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000001562Re-query CCDS DB by Protein ID:ENSMUSP00000001562
Original member Current member NCBI NM_011657.2 NP_035787.1 Accepted alive Link to Nucleotide Sequence:NM_011657.2Link to Protein Sequence:NP_035787.1Re-query CCDS DB by Nucleotide ID:NM_011657Re-query CCDS DB by Protein ID:NP_035787Link to BLAST:NP_035787.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035787.1 460 O88413 460 100% 0 0

Chromosomal Locations for CCDS 39647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128323079 128323212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128323998 128324169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128324980 128325078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128325877 128325991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128326772 128326884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128327540 128327737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128327956 128328077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128333833 128334009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128334438 128334597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128337734 128337785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128355738 128355778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1383 nt):
ATGGAGGCGGCGCGCTGCGCACCCGGACCCCGCGGGGACAGTGCCTTTGACGATGAGACCCTGAGGCTTC
GGCAGCTGAAGCTGGACAATCAGAGGGCACTGCTGGAGAAGAAGCAGAGAAAGAAGCGCCTTGAGCCACT
CATGGTACAGCCAAACCCAGAAGCCAGGCTGCGAAGGTTAAAGCCACGAGGCAGTGAGGAGCACACGCCT
CTGGTGGACCCTCAGATGCCTCGCAGCGACGTCATCCTACACGGCATCGACGGTCCAGCTGCTTTCCTTA
AGCCAGAGGCTCAGGATTTGGAAAGCAAGCCTCAGGTTCTCTCTGTGGGCTCCCCTGCCCCAGAAGAAGG
CACGGAAGGGAGTGCAGATGGGGAAAGCCCCGAGGAGACAGCCCCCAAGCCAGACCTTCAGGAGATTCTC
CAAAAACACGGCATCTTGAGTAGTGTGAACTATGACGAGGAGCCTGACAAGGAGGAAGATGAGGGGGGAA
ACCTCAGCTCCCCGTCGGCTCGCTCAGAGGAGAGTGCTGCAGCCAGCCAGAAAGCAGCCTCGGAGACAGG
AGCTTCCGGTGTGACAGCCCAGCAGGGTGACGCCCAGCTTGGAGAAGTGGAGAATTTAGAGGACTTTGCG
TATAGCCCTGCCCCTCGGGGTGTCACGGTGAAGTGTAAAGTAACCAGGGATAAGAAAGGCATGGACCGTG
GCCTCTTCCCCACCTACTATATGCACCTGGAACGGGAGGAGAACCGCAAGATATTTCTTCTAGCCGGTAG
AAAGCGGAAAAAGAGCAAAACGTCCAACTACCTGGTCTCCACAGACCCGACAGATTTGTCTCGTGAAGGG
GAAAGTTACATTGGCAAACTCAGATCCAATCTCATGGGGACCAAGTTCACAGTGTATGACCATGGTGTCA
ACCCAGTCAAGGCCCAGGGTCTGGTGGAGAAGGCCCACACCCGCCAGGAGCTGGCTGCTATCTGTTATGA
AACAAATGTCCTCGGTTTCAAAGGTCCCAGGAAAATGTCTGTGATCATCCCGGGGATGAACATGAACCAT
GAGCGCATCCCTTTCAGGCCACGAAATGAACACGAGAGCTTGCTTTCAAAATGGCAAAACAAATCCATGG
AGAACCTGATCGAGCTGCACAACAAGGCCCCGGTGTGGAATGACGACACCCAGTCCTACGTGCTGAACTT
TCACGGCAGAGTCACCCAGGCATCCGTGAAAAACTTCCAGATCGTCCACGGGAATGACCCTGACTACATC
GTCATGCAGTTTGGACGCGTGGCTGATGACGTGTTCACACTGGACTATAACTACCCACTGTGCGCACTTC
AAGCCTTCGCCATCGGGCTGTCCAGCTTTGACAGCAAGCTGGCGTGTGAATGA

Translation (460 aa):
MEAARCAPGPRGDSAFDDETLRLRQLKLDNQRALLEKKQRKKRLEPLMVQPNPEARLRRLKPRGSEEHTP
LVDPQMPRSDVILHGIDGPAAFLKPEAQDLESKPQVLSVGSPAPEEGTEGSADGESPEETAPKPDLQEIL
QKHGILSSVNYDEEPDKEEDEGGNLSSPSARSEESAAASQKAASETGASGVTAQQGDAQLGEVENLEDFA
YSPAPRGVTVKCKVTRDKKGMDRGLFPTYYMHLEREENRKIFLLAGRKRKKSKTSNYLVSTDPTDLSREG
ESYIGKLRSNLMGTKFTVYDHGVNPVKAQGLVEKAHTRQELAAICYETNVLGFKGPRKMSVIIPGMNMNH
ERIPFRPRNEHESLLSKWQNKSMENLIELHNKAPVWNDDTQSYVLNFHGRVTQASVKNFQIVHGNDPDYI
VMQFGRVADDVFTLDYNYPLCALQAFAIGLSSFDSKLACE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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