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Report for CCDS23032.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23032.1 Public Mus musculus 9 Or8d23 23 108 98 CCDS HistoryNCBI Gene:258269Re-query CCDS DB by CCDS ID:23032.1Re-query CCDS DB by GeneID:258269See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 23032.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058789.6 ENSMUSP00000080385.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058789.6Link to Ensembl Protein Viewer:ENSMUSP00000080385.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000058789Re-query CCDS DB by Protein ID:ENSMUSP00000080385
Original member Current member EBI ENSMUST00000217208.2 ENSMUSP00000149230.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217208.2Link to Ensembl Protein Viewer:ENSMUSP00000149230.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217208Re-query CCDS DB by Protein ID:ENSMUSP00000149230
Original member Current member NCBI NM_146272.1 NP_666384.1 Accepted alive Link to Nucleotide Sequence:NM_146272.1Link to Protein Sequence:NP_666384.1Re-query CCDS DB by Nucleotide ID:NM_146272Re-query CCDS DB by Protein ID:NP_666384Link to BLAST:NP_666384.1

Chromosomal Locations for CCDS 23032.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 38930173 38931099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGCCACTGGGAATCATTCTGCAGCAGTTGTGTTTGTTTTGGTGGGATTAACACAGCAGCCTGAGCTCC
TGCTGCCCCTCTTCATTCTGTTCCTGGGCATCTATGTGGTGACAGCAGTGGGGAACCTGGGCATGATCCT
GCTCATCACAGTCAGCCCACTGCTGCATACTCCCATGTACTATTTCCTCAGCAGCTTATCCTTTGTTGAT
CTCTCCTATTCCACTGTCATTACACCCAAAATGCTGGTGAACTTTCTTGGGAAGAAAAATTTCATCACTT
ATTCGGAGTGCATGGCTCAGTTCTTTTTCTTTGCGGTCTTTGTGGTCACTGAGGGTTACCTCCTGACTGT
TATGGCGTATGATCACTACGTGGCCATCTGCAGACCATTGCTGTATAATGTGATGATGTCCTCTAAACAC
TGCTTACTGTTAGTGCTAGTTGCCTTCACCCTAGGCCTTTTTTCTGCTGTAGTACACACAAGTGCTATGA
TGAGTCTGAACTTCTGTAAAACCTACATCATAAGTCATTACTTCTGTGATGCTCTTCCTCTCCTCAAACT
TTCCTGCTCTAACACACATCTCAATGAGCTTCTCATATTTATTATTGGAGGGATCAACACCTTGGTGCCC
ACCCTAGCTGTTGCCATTTCCTATGTCTTCATCTTCTGCAGCATCCGTCACATCAAGTCATCAAAGAGCA
GGTCCAAAGCCTTTGGAACCTGCAGCTCTCATCTCATGGCTGTGGGGATCTTCTTTGGGTCTATCACTTT
CATGTATTTAAAGCCTTCTTCAAGTAACTCTCTGGAGCAAGAGAAGGTGTCTTCTGTGTTCTACACCACA
GTGATCCCCATGCTGAACCCATTAATATACAGTTTGAGGAACAAAGATGTGAAGAAAGCACTGGGCAGAT
TCTCTGTAAGAAGATAA

Translation (308 aa):
MATGNHSAAVVFVLVGLTQQPELLLPLFILFLGIYVVTAVGNLGMILLITVSPLLHTPMYYFLSSLSFVD
LSYSTVITPKMLVNFLGKKNFITYSECMAQFFFFAVFVVTEGYLLTVMAYDHYVAICRPLLYNVMMSSKH
CLLLVLVAFTLGLFSAVVHTSAMMSLNFCKTYIISHYFCDALPLLKLSCSNTHLNELLIFIIGGINTLVP
TLAVAISYVFIFCSIRHIKSSKSRSKAFGTCSSHLMAVGIFFGSITFMYLKPSSSNSLEQEKVSSVFYTT
VIPMLNPLIYSLRNKDVKKALGRFSVRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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