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Report for CCDS28769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28769.1 Public Mus musculus 17 Or14j6 23 108 98 CCDS HistoryNCBI Gene:258374Re-query CCDS DB by CCDS ID:28769.1Re-query CCDS DB by GeneID:258374See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 28769.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076331.2 ENSMUSP00000075669.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076331.2Link to Ensembl Protein Viewer:ENSMUSP00000075669.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000076331Re-query CCDS DB by Protein ID:ENSMUSP00000075669
Original member Current member EBI ENSMUST00000217223.1 ENSMUSP00000149133.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217223.1Link to Ensembl Protein Viewer:ENSMUSP00000149133.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217223Re-query CCDS DB by Protein ID:ENSMUSP00000149133
Original member Current member NCBI NM_146377.1 NP_666489.1 Accepted alive Link to Nucleotide Sequence:NM_146377.1Link to Protein Sequence:NP_666489.1Re-query CCDS DB by Nucleotide ID:NM_146377Re-query CCDS DB by Protein ID:NP_666489Link to BLAST:NP_666489.1

Chromosomal Locations for CCDS 28769.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37903548 37904519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGACTCCAAGAAACATGACAACAGTGAGTGGATTCCTCCTCATGGGGTTCTCTGACAACCATGAGCTGC
AGATCTTACAGGCTTTGCTCTTCTTGGTGACATACCTATTGGATTCAGCAGGGAACTTCATCATTATCAC
CATCACAACAATAGACAAACAGCTCCAGTCTCCAATGTATTACTTTCTGAAGCACCTTTCCATTATGGAC
TTCTCATCTCTCTCTGTCACAGTTCCCCAGTATGTTGACAGTTCCCTGGCACGAAGTGGCTATATTTCAT
ATGGGCAGTGCATGCTGCAGGTTTTTTTCTTCACAGGTTTAGCCTGGAGTGAGGTGGCCATTCTCACAGT
GATGTCTTATGACCGCTATGTGGCCATCTGCCTCCCACTGCACTATGAGGTCATAATGAGTCCCAGAAAG
TGCACTTGGGCTGTGGCAGCTGTGTGGCTAAGTGGAGGTATCTCAGGAACATTATTCACAGCAAGTACAC
TCTCTATCAGATTCTGTGGGCACAAAATTATTCACCAGTTCTTCTGTGATATCCCGCAATTGCTCAAGCT
CTCCTGCTCTAATGATGACTTTGGACTACTGAAAGTGTCTACTTTCATTGCTGTAATGGGATTTGCCTGC
TTTGTGGGGATTGCCTTCTCCTATTGCCAGATATTCTCTACAGTTCTCAGGATGCCCTCTGCTGAAGGCC
GATCTAAGGTCTTCTCCACCTGCCTGCCCCATCTCTTCGTTGTTTCATTTTTTCTCTCAACAGGCATTTG
TGCCTATCTAAAGCCAACCTCAGACTCACCAACTGCTTTAGACCTCATGCTCTCTATCTTTTACACAGTA
CTACCCCCAACCCTCAATCCTGTTATCTATAGTCTAAGAAATGAGTCCTTGAAAAGAGCTGTAAAGAAGT
TACTTTTAAGTGAAGAATTCATTGGGAAAAATTATGTTTGTTCTGTTTTTAGTGCCTGCTAA

Translation (323 aa):
MTPRNMTTVSGFLLMGFSDNHELQILQALLFLVTYLLDSAGNFIIITITTIDKQLQSPMYYFLKHLSIMD
FSSLSVTVPQYVDSSLARSGYISYGQCMLQVFFFTGLAWSEVAILTVMSYDRYVAICLPLHYEVIMSPRK
CTWAVAAVWLSGGISGTLFTASTLSIRFCGHKIIHQFFCDIPQLLKLSCSNDDFGLLKVSTFIAVMGFAC
FVGIAFSYCQIFSTVLRMPSAEGRSKVFSTCLPHLFVVSFFLSTGICAYLKPTSDSPTALDLMLSIFYTV
LPPTLNPVIYSLRNESLKRAVKKLLLSEEFIGKNYVCSVFSAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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