NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, December 17, 2024, starting at 8:00 a.m. EST for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16273.1 Public Mus musculus 2 Or8h10 23 108 98 CCDS HistoryNCBI Gene:258587Re-query CCDS DB by CCDS ID:16273.1Re-query CCDS DB by GeneID:258587See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16273.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094913.5 ENSMUSP00000092517.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094913.5Link to Ensembl Protein Viewer:ENSMUSP00000092517.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094913Re-query CCDS DB by Protein ID:ENSMUSP00000092517
Original member Current member EBI ENSMUST00000117211.2 ENSMUSP00000151088.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117211.2Link to Ensembl Protein Viewer:ENSMUSP00000151088.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117211Re-query CCDS DB by Protein ID:ENSMUSP00000151088
Original member Current member NCBI NM_146594.1 NP_666805.1 Accepted alive Link to Nucleotide Sequence:NM_146594.1Link to Protein Sequence:NP_666805.1Re-query CCDS DB by Nucleotide ID:NM_146594Re-query CCDS DB by Protein ID:NP_666805Link to BLAST:NP_666805.1

Chromosomal Locations for CCDS 16273.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 86977829 86978794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGAACACCTGGAATTACACAAAAGAGTCAGACTTCATCCTCATGGGACTGACTGATTCCAAAGAGATAC
AACTAGTCCTTACTGTGCTGTTTGTCCTGATATACCTGGTCACTGTGCTGGGGAACGCAGGCATGATGCT
GATCATTCGTCTAGATGCTCAGCTTCACACTCCAATGTACTTCTTCCTAAGTCATTTGTCATTCCTCGAT
CTCAGTTACTCAACTGTCATCACACCTAAAACTTTACAGAATCTGCTGACTTCCACAAAAGTCATTTCCT
TTATTGGTTGTTTCACTCAGATGTATGCTTTTGTCCTCTTGGCTGCTGCTGAATGTTTTCTTCTTGCTTC
AATGGCCTATGATAGATATGTGGCTATTTGCAACCCCTTACAATACCCAGTTATCATGTCCACAAGATTC
TGTAGTACCCTTCTCACTGGTTCCTATATGATTGGAACTATGGATTCCACTGTTAATATATTTTGTATGA
ACACCTTATATTTCTGCAGAACCAAGGTAATTCATCACTTTTTTTGTGACACATCCCCAATTTTAGCACT
GTCTTGCAGTGATACACGTAACATTCAAATCATTATATTCATCTTTGCTGGTTCCACTCTAGTGGTGTCT
CTTATCACAATATCTGCATCCTATGTGTCTATTCTCTCTACTATTTTGAAAATCAATTCCACTTCAGGAA
AGCACAAAGCCTTCTCCACTTGTGCTTCTCATCTCCTAGGAGTCACTGTCTTTTATGGTACTTTGATTTT
TACTTACTTGAAACCAAGTAATTCCTACTACTCAGGAAAGGAACAAGTGGCTTCTGTTTTCTATACTATA
GTGATCCCCATGCTGAACCCACTCATTTATAGTCTCAGAAACAAAGAAGTGAAAAGTGCTATCCATAGAG
TTATCAAAAAGCAGAAAGGCTCAAGACTTAAATTCAGAGTGGCACTAAGTGATTAA

Translation (321 aa):
MNTWNYTKESDFILMGLTDSKEIQLVLTVLFVLIYLVTVLGNAGMMLIIRLDAQLHTPMYFFLSHLSFLD
LSYSTVITPKTLQNLLTSTKVISFIGCFTQMYAFVLLAAAECFLLASMAYDRYVAICNPLQYPVIMSTRF
CSTLLTGSYMIGTMDSTVNIFCMNTLYFCRTKVIHHFFCDTSPILALSCSDTRNIQIIIFIFAGSTLVVS
LITISASYVSILSTILKINSTSGKHKAFSTCASHLLGVTVFYGTLIFTYLKPSNSYYSGKEQVASVFYTI
VIPMLNPLIYSLRNKEVKSAIHRVIKKQKGSRLKFRVALSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH