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Report for CCDS21728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21728.1 Public Mus musculus 7 Or10a3b 23 108 98 CCDS HistoryNCBI Gene:258720Re-query CCDS DB by CCDS ID:21728.1Re-query CCDS DB by GeneID:258720See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071410.1 ENSMUSP00000071358.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071410.1Link to Ensembl Protein Viewer:ENSMUSP00000071358.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000071410Re-query CCDS DB by Protein ID:ENSMUSP00000071358
Original member Current member EBI ENSMUST00000216092.1 ENSMUSP00000149160.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216092.1Link to Ensembl Protein Viewer:ENSMUSP00000149160.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216092Re-query CCDS DB by Protein ID:ENSMUSP00000149160
Original member Current member EBI ENSMUST00000217279.1 ENSMUSP00000150359.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217279.1Link to Ensembl Protein Viewer:ENSMUSP00000150359.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217279Re-query CCDS DB by Protein ID:ENSMUSP00000150359
Original member Current member NCBI NM_146725.1 NP_666936.1 Accepted alive Link to Nucleotide Sequence:NM_146725.1Link to Protein Sequence:NP_666936.1Re-query CCDS DB by Nucleotide ID:NM_146725Re-query CCDS DB by Protein ID:NP_666936Link to BLAST:NP_666936.1

Chromosomal Locations for CCDS 21728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 108845064 108846008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGAGGAGGCAAAATCACAACTCTACAGTTGAATTCATCCTCTTGGGATTTTCTAACTATCCTGAACTTC
AAGGTCAGATGTTTGGGGCTTTCCTAGTTATTTATCTGGTGACTGTGTTGGGAAATGCCATCATTATCAC
CATCATCTTCCTGGACCAGAGTTTGCACATCCCTATGTACCTGTTTCTGCAAAATTTATCTTTAGTGGAC
CTCTGTTTCAGTACAGTCATCACACCTGAAATACTGGTGGTCCTGACTAGTGAGAAAGCGACCATTTCCT
TTGGTGGCTGTTTTGTGCAGATGTACTTCATTCTTCTCTTTGGTGGAACTGAGTGTTTTCTCCTGGGGGC
AATGGCTTATGATCGATTTGCTGCAATCTGCCATCCTCTATCTTACCCCGTGATTATGAACAAAAGTGTC
TTTGTGAAATTAGTTATGTTCTCATGGGTCTCAGGTACCATGATGACTACTCTGCAGACCACATGGGTGT
TTAGCTTCCCCTACTGTGACCACAAGGAAATTAACCATCTCTTCTGTGAGACTCCTCCTGTGCTGGAGCT
TGCCTGTGCAGACACCTTCCTGTTTGAAGTCTATGCCTTCACAGGCACCATTTTGATTGTCATGGTCCCC
TTCCTGTTGATACTCTTGTCTTATACTCGAATTCTCTTCTCCATCCTGAGGATGCCATCCACTACAGGGA
GGCAGAAGGCCTTTTCCACGTGTGCCTCTCATCTCACCTCTGTCACCCTCTTCTATGGCACAGCCAGTAT
AACTTATCTACAGCCCAAATCCAGGTACTCACCAGACACCAAGAAACTGATGTCACTGGCATACACACTT
CTCACCCCTCTGCTGAATCCACTTATCTACAGCCTGAGAAACAAGGAGATGAAAAGGGCTGTGGTAAAAT
TATGGCAAAGAAAAGTGACTTTACACACAGGTTGA

Translation (314 aa):
MRRQNHNSTVEFILLGFSNYPELQGQMFGAFLVIYLVTVLGNAIIITIIFLDQSLHIPMYLFLQNLSLVD
LCFSTVITPEILVVLTSEKATISFGGCFVQMYFILLFGGTECFLLGAMAYDRFAAICHPLSYPVIMNKSV
FVKLVMFSWVSGTMMTTLQTTWVFSFPYCDHKEINHLFCETPPVLELACADTFLFEVYAFTGTILIVMVP
FLLILLSYTRILFSILRMPSTTGRQKAFSTCASHLTSVTLFYGTASITYLQPKSRYSPDTKKLMSLAYTL
LTPLLNPLIYSLRNKEMKRAVVKLWQRKVTLHTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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