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Report for CCDS20453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20453.1 Public Mus musculus 6 Or13a1 23 108 98 CCDS HistoryNCBI Gene:258914Re-query CCDS DB by CCDS ID:20453.1Re-query CCDS DB by GeneID:258914See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20453.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065786.3 ENSMUSP00000066524.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065786.3Link to Ensembl Protein Viewer:ENSMUSP00000066524.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000065786Re-query CCDS DB by Protein ID:ENSMUSP00000066524
Original member Current member EBI ENSMUST00000203700.2 ENSMUSP00000145330.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203700.2Link to Ensembl Protein Viewer:ENSMUSP00000145330.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203700Re-query CCDS DB by Protein ID:ENSMUSP00000145330
Original member Current member NCBI NM_146912.1 NP_667123.1 Accepted alive Link to Nucleotide Sequence:NM_146912.1Link to Protein Sequence:NP_667123.1Re-query CCDS DB by Nucleotide ID:NM_146912Re-query CCDS DB by Protein ID:NP_667123Link to BLAST:NP_667123.1

Chromosomal Locations for CCDS 20453.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116493611 116494540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGATGAGAAACCAGACACTGGTAACAGAGTTCATCCTTCAGGGCTTCTCTGAGCACCCACAGTACCAGC
TGCCCTTGTTTTTCTGTTTCCTCTCCCTTTACTGTGTGGCCCTCACAGGTAATGTCCTTATCATCTTGGC
TATCACCTGCAACCCTGGGCTCCACACCCCCATGTATTTTTTCTTGTTTAATTTGGCTACTATGGACATC
ATCTGTACCTCCTCCATTATGCCCAAGGCCCTGAGGGGTCTGGTGTCAAAGAGGAACCCCATCTCCTACG
GTGGCTGCATGGCCCAGCTCTATTTCCTTACATGGTCTGCTTCCTCAGAGTTGCTCCTCCTCACTGTCAT
GGCCTACGACCGTTATGCAGCCATCTGCCACCCTCTGCATTACAGCACCATGATGAGCAAAGCATTCTGT
AGCATGTTGGCTGCTGGAGTGTGGGCACTCTGCGCTTTCAACACAGCCATTCACACAGGACTGATGACTC
GCTTGAGCTTCTGTGGGCCCAATGTCATTACACATTTCTTCTGTGAGGTGCCTCCTCTGCTGCTTCTCTC
CTGCAGCTCCACCTACGTGAACAGTGTCATGATTGTCTTGGCTGATGCCTTTTATGGCATATTGAACTTC
CTGATGACCATTGTGTCATACGGCTTCATCATTTCCAGCATCCTGAAGATGCGGACATCAGAAGGGAAGC
AGAAAGCCTTCTCAACCTGCTCTTCCCACCTCATTGTGGTGTGCATGTATTACACCGCTGTCTTCTATGC
CTACATAAGCCCTGTCTCCAGCTATAATGCAGAGAAGAGCAAATTGGCTGGTGTGCTGTATACCATGTTG
AGCCCTACGCTCAACCCTCTGATCTATACTTTGAGAAACAAGGAAGTCAAAGCAGCTCTCAGGAAATTTT
TTCCTTTCCTCAGAAATTAA

Translation (309 aa):
MMRNQTLVTEFILQGFSEHPQYQLPLFFCFLSLYCVALTGNVLIILAITCNPGLHTPMYFFLFNLATMDI
ICTSSIMPKALRGLVSKRNPISYGGCMAQLYFLTWSASSELLLLTVMAYDRYAAICHPLHYSTMMSKAFC
SMLAAGVWALCAFNTAIHTGLMTRLSFCGPNVITHFFCEVPPLLLLSCSSTYVNSVMIVLADAFYGILNF
LMTIVSYGFIISSILKMRTSEGKQKAFSTCSSHLIVVCMYYTAVFYAYISPVSSYNAEKSKLAGVLYTML
SPTLNPLIYTLRNKEVKAALRKFFPFLRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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