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Report for CCDS21642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21642.1 Public Mus musculus 7 Or56a5 23 108 98 CCDS HistoryNCBI Gene:259047Re-query CCDS DB by CCDS ID:21642.1Re-query CCDS DB by GeneID:259047See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061284.3 ENSMUSP00000060527.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061284.3Link to Ensembl Protein Viewer:ENSMUSP00000060527.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000061284Re-query CCDS DB by Protein ID:ENSMUSP00000060527
Original member Current member NCBI NM_147045.1 NP_667256.1 Accepted alive Link to Nucleotide Sequence:NM_147045.1Link to Protein Sequence:NP_667256.1Re-query CCDS DB by Nucleotide ID:NM_147045Re-query CCDS DB by Protein ID:NP_667256Link to BLAST:NP_667256.1

Chromosomal Locations for CCDS 21642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 105143350 105144309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGATCAGAAGGCAACACATGGAAGCACAAAGCAACACTTCCTCTATCCTGGCCCCTGACTTCCTCCTCA
TCTGCTTCCCCAACTACCAGACCTGGCAGCATTGGCTGTCCCTGCCCCTCAGCCTCCTCTTCCTCCTGGC
CATGGGAGCCAATGCCACCCTTCTCATCACCATCAGGATGGAGGCCTCTCTGCATGAGCCCATGTACTAC
CTGCTCAGCCTTCTGTCCCTGCTGGACATTGTGCTCTGCCTCACTGTCATACCTAAGGTCCTGGCCATCT
TCTGGTTTGACAATAAATCTATTGGCTTCTCTTCCTGCTTCCTCCAGATGTTTGTCATGAACAGTTTCCT
GACGATGGAGTCCTGCACCTTCATGGTCATGGCTTATGACCGCTATGTGGCCATCTGTAAGCCTCTACAG
TACCCATCCATCATCACTGATCAGTTTGTGGTTAGGGCTGCCATCTTTGTAGCAGCCAGAAATGGGATTC
TTACTATGCCCATCCCCATACTTTCTTCCCAACTGAGATATTGTGCAAGAATTATCAGGAACTGCATCTG
CACTAACATGTCTGTTTCCAAACTCTCCTGTGATGACATCACTTTTAATAAACTCTACCAGTTTGTTATA
GGTTGGACCCTGCTGGGTTCTGACCTCATCCTCATTGTTCTATCTTATTCATTCATTCTGAAGGCTGTGC
TCAGGATCAAAGCAGAGGGAGCTGTGGCCAAAGCCCTGAGCACATGTGGTTCCCACTTCATCCTCATCCT
CTTCTTCAGCACAGTCTTGCTGGTGCTAGTCATCACTAACCTGGCCAGGGAGAGGATTCCTCCGGACGTC
CCCATCCTGCTCAATATCCTGCATCACCTCATCCCCCCAGCTCTGAATCCCATTGTTTATGGGGTAAGAA
CCAGGGAGATCAAGCAGGGAATACGGAACCTTCTTAGGAGGAGGTTGTAA

Translation (319 aa):
MIRRQHMEAQSNTSSILAPDFLLICFPNYQTWQHWLSLPLSLLFLLAMGANATLLITIRMEASLHEPMYY
LLSLLSLLDIVLCLTVIPKVLAIFWFDNKSIGFSSCFLQMFVMNSFLTMESCTFMVMAYDRYVAICKPLQ
YPSIITDQFVVRAAIFVAARNGILTMPIPILSSQLRYCARIIRNCICTNMSVSKLSCDDITFNKLYQFVI
GWTLLGSDLILIVLSYSFILKAVLRIKAEGAVAKALSTCGSHFILILFFSTVLLVLVITNLARERIPPDV
PILLNILHHLIPPALNPIVYGVRTREIKQGIRNLLRRRL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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