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Report for CCDS30428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30428.1 Public Mus musculus X Fam199x 23 108 98 CCDS HistoryNCBI Gene:245622Re-query CCDS DB by CCDS ID:30428.1Re-query CCDS DB by GeneID:245622See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30428.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047852.7 ENSMUSP00000045544.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047852.7Link to Ensembl Protein Viewer:ENSMUSP00000045544.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000047852Re-query CCDS DB by Protein ID:ENSMUSP00000045544
Original member Current member NCBI NM_146261.2 NP_666373.1 Accepted alive Link to Nucleotide Sequence:NM_146261.2Link to Protein Sequence:NP_666373.1Re-query CCDS DB by Nucleotide ID:NM_146261Re-query CCDS DB by Protein ID:NP_666373Link to BLAST:NP_666373.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666373.1 388 Q8K2D0 388 100% 0 0

Chromosomal Locations for CCDS 30428.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 137049873 137050069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 137062658 137062877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 137071499 137071648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 137072014 137072175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 137073889 137074155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 137075480 137075650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1167 nt):
ATGTCCGACGAGGCGTCGGCCACCACTTCCTATGAGAAGTTTTTAACCCCAGAGGAGCCCTTCCCTTTCC
TAGGAGCTCCTCGCGGGGTGGGCACCTGCCCCAGCGAGGAACCTGGCTGCCTGGACATCAGCGACTTCGG
CTGCCAGCTCTCCTCCTGCCATCGCACGGATCCGCTCCACCGGTTTCACACCAACAGGTGGAACCTCACT
TCGTGTGGTACAAGTGTCGCAAGCTCTGAATGTAGTGAGGAGCTGTTCTCATCCGTTTCTGTTGGAGATC
AAGATGACTGCTACTCCCTGTTAGATGATCAAGACTTCACTTCTTTTGACTTGTTCCCCGAGGGGAGTGT
CTGCAGTGATGTCTCCTCATCTATCAGCACGTACTGGGATTGGTCAGATAGTGAATTTGAGTGGCAGTTA
CCAGGCAGTGACATTGCCAGTGGAAGCGATGTGCTTTCTGACGTCATACCCAGTATTCCAAGTTCACCTT
GCCTGGTTTCTAAAAAGAAAAACAAACACCGGAATCTAGATGAGCTTGCTTGGAGTGCGATGACAAATGA
TGAGCAGGTGGAATATATTGAGTATCTGAGCCGTAAAGTCAGTACTGAGATGGGCCTCCGGGAGCAACTT
GACATTATTAAAATCATTGATCCTTCTGCTCAGATCTCCCCTACAGACAGTGAGTTCATTATTGAACTTA
ACTGTCTCACAGATGAAAAACTGAAGCAGGTCAGAAACTATATCAAGGAGCATAGCCTTCGTCAGCGGCC
TACAAGGGAGGCCTGGAAGAGAAGCAACTTCAGCTGTGCAAGCACCAGTGGAGTGAGCGGTGCCAGCGCC
AGTGCCAGCAGCAGCAGTGCCAGCATGGTCAGCTCTGCAAGCAGCAGTGGCTCCAGTGTTGGAAACTCTG
CTTCAAACTCCAGTGCCAACATGAGCCGAGCACACAGTGACAGCAACCTGTCTGCAAGTGCGGCAGAGCG
GATTCGGGATTCAAAAAAGCGATCCAAGCAGCGAAAGCTCCAGCAGAAGGCCTTCCGCAAGAGGCAGCTG
AAGGAGCAGAGGCAGGCGCGGAAGGAGAGGCTCAGTGGGCTCTTCCTCAACGAAGAGGTGCTCTCCTTGA
AAGTGACTGAGGAAGACCATGAAGCAGATGTTGATGTTTTGATGTAA

Translation (388 aa):
MSDEASATTSYEKFLTPEEPFPFLGAPRGVGTCPSEEPGCLDISDFGCQLSSCHRTDPLHRFHTNRWNLT
SCGTSVASSECSEELFSSVSVGDQDDCYSLLDDQDFTSFDLFPEGSVCSDVSSSISTYWDWSDSEFEWQL
PGSDIASGSDVLSDVIPSIPSSPCLVSKKKNKHRNLDELAWSAMTNDEQVEYIEYLSRKVSTEMGLREQL
DIIKIIDPSAQISPTDSEFIIELNCLTDEKLKQVRNYIKEHSLRQRPTREAWKRSNFSCASTSGVSGASA
SASSSSASMVSSASSSGSSVGNSASNSSANMSRAHSDSNLSASAAERIRDSKKRSKQRKLQQKAFRKRQL
KEQRQARKERLSGLFLNEEVLSLKVTEEDHEADVDVLM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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