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Report for CCDS24777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24777.1 Public Mus musculus 11 Flcn 23 108 98 CCDS HistoryNCBI Gene:216805Re-query CCDS DB by CCDS ID:24777.1Re-query CCDS DB by GeneID:216805See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091246.10 ENSMUSP00000091696.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091246.10Link to Ensembl Protein Viewer:ENSMUSP00000091696.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000091246Re-query CCDS DB by Protein ID:ENSMUSP00000091696
Original member Current member EBI ENSMUST00000102697.9 ENSMUSP00000099758.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102697.9Link to Ensembl Protein Viewer:ENSMUSP00000099758.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102697Re-query CCDS DB by Protein ID:ENSMUSP00000099758
Original member Current member NCBI NM_001271356.1 NP_001258285.1 Accepted alive Link to Nucleotide Sequence:NM_001271356.1Link to Protein Sequence:NP_001258285.1Re-query CCDS DB by Nucleotide ID:NM_001271356Re-query CCDS DB by Protein ID:NP_001258285Link to BLAST:NP_001258285.1
Original member Current member NCBI NM_001271357.1 NP_001258286.1 Accepted alive Link to Nucleotide Sequence:NM_001271357.1Link to Protein Sequence:NP_001258286.1Re-query CCDS DB by Nucleotide ID:NM_001271357Re-query CCDS DB by Protein ID:NP_001258286Link to BLAST:NP_001258286.1
Original member Current member NCBI NM_146018.2 NP_666130.1 Accepted alive Link to Nucleotide Sequence:NM_146018.2Link to Protein Sequence:NP_666130.1Re-query CCDS DB by Nucleotide ID:NM_146018Re-query CCDS DB by Protein ID:NP_666130Link to BLAST:NP_666130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258285.1 579 Q8QZS3 579 100% 0 0
NP_001258286.1 579 Q8QZS3 579 100% 0 0
NP_666130.1 579 Q8QZS3 579 100% 0 0

Chromosomal Locations for CCDS 24777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59792610 59792811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59794086 59794191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59794273 59794404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59795141 59795264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59795750 59795863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59798055 59798245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59799354 59799445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59801043 59801203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59802129 59802350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59803749 59803895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59804521 59804769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGAACGCCATAGTCGCCCTCTGCCACTTCTGCGAGCTCCATGGCCCCCGCACGCTCTTCTGCACGGAAG
TTCTACACGCTCCCCTGCCCCAGGGGGCCGGAAGTGGGGACAGTCCTGACCAGGTTGAGCAGGCTGAGGA
GGAGGAGGGTGGCATTCAGATGAGCAGCCGGGTCCGTGCCCACAGCCCAGCCGAGGGTGCCAGCAGTGAG
TCCAGCAGCCCGGGGCCCAAGAAGTCGGACATGTGTGAGGGCTGCCGGTCACTTGCCGTAGGGCACCCAG
GCTATATCAGTCATGATAAAGAGACCTCTATTAAGTACGTCAGTCACCAGCACCCCAACCACCCGCAGCT
CTTCAGCATCGTCCGCCAGGCCTGTGTCCGGAGCCTGAGCTGTGAGGTATGCCCTGGTCGTGAAGGCCCC
ATCTTCTTTGGTGATGAGCAGCACGGCTTTGTGTTCAGCCACACCTTCTTCATCAAAGACAGCCTGGCCA
GAGGCTTCCAGCGCTGGTACAGCATCATCGCCATCATGATGGATCGGATCTACCTCATCAACTCCTGGCC
CTTCCTGCTGGGGAGGATCCGCGGCATCATCAGTGAGCTCCAGGCCAAGGCCTTCAAGGTGTTTGAGGCA
GAGCAGTTTGGATGTCCACAGCGTGCCCAGAGGATGAACACTGCCTTCACGCCCTTCCTGCACCAGAGGA
ACGGCAACGCTGCCCGCTCTCTGACCTCCTTGACCAGTGATGACAACTTGTGGGCGTGTCTGCACACTTC
CTTTGCCTGGCTCCTGAAGGCATGCGGTAGCAGGCTGACAGAAAAGCTCTTAGAGGGCGCTCCCACAGAG
GACACCCTGGTCCAGATGGAGAAGCTTGCTGACTTGGAGGAAGAATCAGAAAGTTGGGACAATTCTGAGG
CTGAGGAGGAGGAGAAAGCTCCTGTTACACCAGAGGGTGCTGAAGGGCGAGAGCTGACCAGTTGCCCAAC
AGAGTCATCCTTTCTCTCAGCCTGTGGGAGCTGGCAGCCCCCAAAGCTTACCGGCTTCAAGTCTCTTCGA
CACATGAGACAGGTCTTGGGTGCTCCATCCTTCCGTATGTTGGCTTGGCATGTCCTCATGGGGAATCAGG
TGATCTGGAAAAGCAGAGATGTGAACCTGGTCCATTCAGCGTTTGAAGTCCTCCGGACCATGCTGCCTGT
GGGCTGTGTCCGCATCATCCCTTACAGCAGCCAGTATGAGGAGGCCTATCGCTGCAACTTCCTGGGGCTC
AGCCCTCCCGTGCCTATCCCTGCCCATGTTCTGGCCTCAGAGTTCGTAGTTGTCGTGGAGGTCCACACGG
CCACTCGCTCAAACCTCCACCCTGCTGGGTGCGAGGATGACCAGTCCCTCAGCAAGTATGAGTTTGTGGT
GACCAGTGGTAGCCCTGTGGCTGCAGACAGAGTTGGGCCCACTATCCTGAATAAGATTGAAGCAGCTCTG
ACCAACCAGAACCTGTCTGTGGATGTGGTGGACCAATGTCTCATCTGCCTCAAGGAGGAATGGATGAACA
AAGTGAAAGTCCTGTTTAAATTCACCAAGGTAGACAGTCGCCCCAAGGAGGACACACAGAAGCTCCTAAG
CGTCCTAGGCGCATCAGAGGAGGACAACGTCAAACTGCTGAAGTTCTGGATGACGGGACTGAGCAAAACC
TACAAGTCCCATCTCATGTCCACCGTCCGAAGCCCCACAGCTACAGAGTCACGGAGCTGA

Translation (579 aa):
MNAIVALCHFCELHGPRTLFCTEVLHAPLPQGAGSGDSPDQVEQAEEEEGGIQMSSRVRAHSPAEGASSE
SSSPGPKKSDMCEGCRSLAVGHPGYISHDKETSIKYVSHQHPNHPQLFSIVRQACVRSLSCEVCPGREGP
IFFGDEQHGFVFSHTFFIKDSLARGFQRWYSIIAIMMDRIYLINSWPFLLGRIRGIISELQAKAFKVFEA
EQFGCPQRAQRMNTAFTPFLHQRNGNAARSLTSLTSDDNLWACLHTSFAWLLKACGSRLTEKLLEGAPTE
DTLVQMEKLADLEEESESWDNSEAEEEEKAPVTPEGAEGRELTSCPTESSFLSACGSWQPPKLTGFKSLR
HMRQVLGAPSFRMLAWHVLMGNQVIWKSRDVNLVHSAFEVLRTMLPVGCVRIIPYSSQYEEAYRCNFLGL
SPPVPIPAHVLASEFVVVVEVHTATRSNLHPAGCEDDQSLSKYEFVVTSGSPVAADRVGPTILNKIEAAL
TNQNLSVDVVDQCLICLKEEWMNKVKVLFKFTKVDSRPKEDTQKLLSVLGASEEDNVKLLKFWMTGLSKT
YKSHLMSTVRSPTATESRS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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