CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS23948.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
23948.1 |
Public |
Mus musculus |
10 |
Lss |
23 |
108 |
98 |
|
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 23948.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENSMUST00000048678.6 |
ENSMUSP00000046856.6 |
Accepted |
alive |
|
|
|
NCBI |
NM_146006.2 |
NP_666118.1 |
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_666118.1 |
733 |
Q8BLN5 |
733 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 23948.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2202 nt): ATGACTGAGGGCACGTGTCTGCGGCGTCGTGGGGGACCCTATAAAACTGAGCCCGCCACCGATCTCACCC GCTGGCGGCTCCAGAATGAGTTGGGTCGGCAGAGATGGACTTATTATCAAGCGGAGGACGACCCTGGTCG AGAGCAGACCGGGCTAGAGGCCCACTCTTTGGGACTGGACACAAGAAGTTATTTCACGGACTTACCAAAA GCGCAAACAGCCCATGAGGGGGCCCTGAATGGAGTAACCTTTTATGCCAAGCTGCAGGCTGAGGATGGAC ACTGGGCTGGTGATTATGGTGGTCCGCTCTTCCTCTTGCCAGGTCTCCTGATTACCTGTCACATATCACA CATCTCTCTGCCAGCTGGATACAGAGAGGAGATGGTGCGGTACCTGCGGTCAGTGCAGCTCCCTGATGGC GGCTGGGGCTTGCACATCGAGGACAAGTCCACAGTGTTTGGGACTGCCCTGAACTATGTGGCTCTCAGAA TCCTGGGTATTGGGCCTGATGATCCTGACCTTGTGCGCGCTCGGAACGTCCTTCACAAAAAAGGTGGTGC GGTGGCCATCCCTTCCTGGGGGAAGTTCTGGCTGGCTGTCCTGAATGTTTATAGCTGGGAAGGACTCAAC ACCCTATTCCCTGAGATGTGGCTGTTTCCTGAATGGGTACCAGCGCACCCCTCCACTCTCTGGTGTCACT GCCGGCAGGTCTATCTGCCCATGAGTTACTGCTACGCCACTCGGCTAAGTGCCTCAGAGGACCCACTGGT TCAGAGCCTCCGCCAGGAACTCTATGTGCAGGATTACGCCAGCATCGATTGGCCAGCGCAGAGGAACAAC GTGTCCCCCGATGAGATGTACACGCCACACAGCTGGCTGCTGCATGTGGTGTATGGACTCCTCAACCTGT ATGAACGTTTCCATAGCACCAGCCTGCGGAAGTGGGCCGTCCAGATGCTGTATGAACACATTGCAGCTGA TGACTGTTTCACTAAGTGCATCAGCATCGGCCCGATCTCAAAGACCATCAACATGCTTGTTCGTTGGTCA GTGGATGGACCATCCTCCCCGGCCTTCCAGGAGCACGTTTCTCGGATCAAAGATTACCTTTGGCTGGGCC TTGATGGCATGAAAATGCAGGGCACCAATGGATCACAGATCTGGGACACTTCATTTGCTATCCAAGCACT GTTAGAGGCAGGTGCACACCACAGACCTGAGTTTCTGCCCTGCCTGCAGAAGGCTCACGAGTTCCTGCGG CTTTCACAGGTTCCAGAAAACTGTCCTGACTATCAGAAGTACTATCGCCATATGCGCAAGGGTGGTTTCT CCTTCAGCACACTGGACTGTGGCTGGATCGTTGCTGACTGCACAGCCGAGGGTTTGAAGGCTGTGCTGCT CCTGCAGAATCAGTGTCCGTCCATCACTGAGCATATCCCCCGAGAGCGGCTGTGCGATGCTGTGGATGTG TTACTGAGCTTGAGGAATGCTGATGGCGGGTTCGCTACCTATGAGAAGAAGCGTGGGGGTTACTTGCTGG AGCTGCTGAACCCCTCAGAGGTCTTTGGAGACATCATGATTGACTACACGTATGTAGAGTGTACCTCCGC TGTGATGCAGGCACTGAAGCATTTCCATGAACACTTCCCAGACTACAGGGCAGCAGAGGTCAGGGAGACC CTCAATCAAGGCCTGGACTTCTGCCGAAGGAAGCAGAGAGCCGATGGCTCCTGGGAGGGCTCCTGGGGTG TTTGTTTCACCTACGGCACCTGGTTTGGCTTGGAAGCGTTCGCTTGCATGGGGCATACCTACCAAGATGG GGCTGCTTGTGCAGAAGTAGCTCAGGCCTGCAACTTCCTCCTGTCCCAGCAGATGGCGGATGGAGGCTGG GGAGAGGACTTTGAATCATGTGAACAGCGGCGGTATGTGCAGAGTGCTAGGTCCCAGGTCCATAGCACCT GCTGGGCCCTGATGGGTTTGATGGCTGTCAGGCATCCCGACATCACTGCTCAGGAGAGAGGGATCAGATG TCTGCTAGGGAAGCAGTTACCCAATGGAGACTGGCCTCAGGAGAACATCTCTGGGGTCTTCAACAAGTCC TGTGCCATCAGCTACACAAGTTACAGAAACATCTTCCCCATCTGGGCCCTGGGCCGCTTCTCCAACCTGT ATCCTGACAATACCCTCGCCGGCCACATTTGA
Translation (733 aa): MTEGTCLRRRGGPYKTEPATDLTRWRLQNELGRQRWTYYQAEDDPGREQTGLEAHSLGLDTRSYFTDLPK AQTAHEGALNGVTFYAKLQAEDGHWAGDYGGPLFLLPGLLITCHISHISLPAGYREEMVRYLRSVQLPDG GWGLHIEDKSTVFGTALNYVALRILGIGPDDPDLVRARNVLHKKGGAVAIPSWGKFWLAVLNVYSWEGLN TLFPEMWLFPEWVPAHPSTLWCHCRQVYLPMSYCYATRLSASEDPLVQSLRQELYVQDYASIDWPAQRNN VSPDEMYTPHSWLLHVVYGLLNLYERFHSTSLRKWAVQMLYEHIAADDCFTKCISIGPISKTINMLVRWS VDGPSSPAFQEHVSRIKDYLWLGLDGMKMQGTNGSQIWDTSFAIQALLEAGAHHRPEFLPCLQKAHEFLR LSQVPENCPDYQKYYRHMRKGGFSFSTLDCGWIVADCTAEGLKAVLLLQNQCPSITEHIPRERLCDAVDV LLSLRNADGGFATYEKKRGGYLLELLNPSEVFGDIMIDYTYVECTSAVMQALKHFHEHFPDYRAAEVRET LNQGLDFCRRKQRADGSWEGSWGVCFTYGTWFGLEAFACMGHTYQDGAACAEVAQACNFLLSQQMADGGW GEDFESCEQRRYVQSARSQVHSTCWALMGLMAVRHPDITAQERGIRCLLGKQLPNGDWPQENISGVFNKS CAISYTSYRNIFPIWALGRFSNLYPDNTLAGHI
|