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Report for CCDS24543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24543.1 Public Mus musculus 11 Pank3 23 108 98 CCDS HistoryNCBI Gene:211347Re-query CCDS DB by CCDS ID:24543.1Re-query CCDS DB by GeneID:211347See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018990.7 ENSMUSP00000018990.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018990.7Link to Ensembl Protein Viewer:ENSMUSP00000018990.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000018990Re-query CCDS DB by Protein ID:ENSMUSP00000018990
Original member Current member NCBI NM_145962.2 NP_666074.1 Accepted alive Link to Nucleotide Sequence:NM_145962.2Link to Protein Sequence:NP_666074.1Re-query CCDS DB by Nucleotide ID:NM_145962Re-query CCDS DB by Protein ID:NP_666074Link to BLAST:NP_666074.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666074.1 370 Q8R2W9 370 100% 0 0

Chromosomal Locations for CCDS 24543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 35769920 35769947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35776086 35776438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35777567 35777820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35778576 35778752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35781584 35781707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35783448 35783573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 35785408 35785458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGAAGATCAAGGATGCCAAAAAACCCTCTTTCCCATGGTTTGGCATGGACATTGGAGGAACGCTAGTAA
AGCTCTCATACTTTGAACCTATTGACATCACAGCAGAGGAAGAACAAGAGGAAGTTGAGAGCTTAAAGAG
TATTCGGAAATACTTGACTTCTAATGTAGCATATGGATCTACTGGCATTCGGGATGTACATCTTGAGCTG
AAGGATTTAACACTTTTTGGACGAAGAGGAAACTTGCACTTTATCAGATTTCCAACCCAGGACCTGCCTA
CTTTTATCCAAATGGGGAGAGATAAAAATTTCTCAACCTTACAAACGGTGCTGAGTGCTACAGGAGGTGG
TGCTTACAAGTTTGAGAAAGATTTTCGCACAATTGGAAACCTCCACCTGCACAAACTGGATGAACTTGAC
TGCCTTGTAAAGGGCTTGCTGTACATAGATTCCGTCAGTTTCAATGGACAAGCAGAATGCTATTATTTTG
CTAATGCCTCAGAACCCGAGCGATGCCAAAAGATGCCTTTTAACCTGGATGATCCTTACCCACTGCTGGT
AGTGAATATTGGCTCAGGAGTCAGTATTTTAGCAGTCCATTCCAAAGACAACTATAAAAGAGTGACTGGG
ACAAGCCTTGGAGGGGGCACCTTTCTTGGTTTATGCAGTTTGTTGACTGGCTGTGAAAGTTTTGAAGAGG
CTCTGGAAATGGCATCCAAAGGTGACAGCACCCAAGCTGATAGGTTGGTCCGAGATATTTATGGAGGAGA
TTATGAAAGATTTGGTCTGCCAGGTTGGGCGGTGGCATCTAGTTTTGGTAATATGATTTATAAGGAGAAA
CGAGAAACTGTTAGTAAAGAGGATCTGGCAAGAGCTACTTTAGTTACTATCACCAATAACATTGGTTCTG
TGGCACGAATGTGTGCTGTTAATGAGAAAATAAATCGAGTTGTCTTCGTTGGGAACTTTTTACGTGTCAA
TACTCTCTCGATGAAACTGTTGGCATATGCTTTGGATTACTGGTCAAAGGGTCAACTGAAAGCATTGTTT
TTAGAACATGAGGGATACTTTGGAGCTGTTGGTGCGCTTCTTGGACTGCCGAATTTCAGCTAA

Translation (370 aa):
MKIKDAKKPSFPWFGMDIGGTLVKLSYFEPIDITAEEEQEEVESLKSIRKYLTSNVAYGSTGIRDVHLEL
KDLTLFGRRGNLHFIRFPTQDLPTFIQMGRDKNFSTLQTVLSATGGGAYKFEKDFRTIGNLHLHKLDELD
CLVKGLLYIDSVSFNGQAECYYFANASEPERCQKMPFNLDDPYPLLVVNIGSGVSILAVHSKDNYKRVTG
TSLGGGTFLGLCSLLTGCESFEEALEMASKGDSTQADRLVRDIYGGDYERFGLPGWAVASSFGNMIYKEK
RETVSKEDLARATLVTITNNIGSVARMCAVNEKINRVVFVGNFLRVNTLSMKLLAYALDYWSKGQLKALF
LEHEGYFGAVGALLGLPNFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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