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Report for CCDS44613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44613.1 Public Homo sapiens 11 PATL1 24 110 108 CCDS HistoryNCBI Gene:219988Re-query CCDS DB by CCDS ID:44613.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44613.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000300146.10 ENSP00000300146.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000300146.10Link to Ensembl Protein Viewer:ENSP00000300146.9Re-query CCDS DB by Nucleotide ID:ENST00000300146Re-query CCDS DB by Protein ID:ENSP00000300146
Original member Current member NCBI NM_152716.3 NP_689929.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152716.3Link to Protein Sequence:NP_689929.2Re-query CCDS DB by Nucleotide ID:NM_152716Re-query CCDS DB by Protein ID:NP_689929Link to BLAST:NP_689929.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689929.2 770 Q86TB9-1 770 100% 0 0

Chromosomal Locations for CCDS 44613.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59638390 59638411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59639048 59639197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59639292 59639383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59642880 59643035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59647754 59647913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59649462 59649610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59650754 59650813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59651544 59651641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59652464 59652587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59652838 59653018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59653983 59654072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59655523 59655740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59655956 59656045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59656499 59656600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59657530 59657724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59658866 59658946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59659252 59659469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59666853 59666964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59668881 59668895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2313 nt):
ATGTTCCGCTACGAGTCTTTGGAGGATTGTCCTCTGGATGAAGATGAAGATGCATTTCAGGGACTGGGAG
AAGAAGATGAAGAGATTGATCAATTCAATGATGATACATTTGGGTCAGGTGCAGTTGATGATGATTGGCA
GGAAGCACATGAGCGCCTGGCTGAATTGGAAGAAAAGCTACCAGTGGCAGTTAATGAACAAACAGGCAAT
GGAGAGAGAGATGAAATGGACTTGTTGGGTGACCATGAGGAGAATCTGGCAGAAAGGCTCAGTAAGATGG
TGATTGAAAATGAACTAGAAGATCCAGCTATTATGAGGGCAGTGCAGACCAGGCCAGTTTTACAACCCCA
ACCAGGAAGTCTGAATTCCAGTATCTGGGATGGATCTGAAGTTCTGAGGCGAATCCGAGGACCACTGCTT
GCTCAGGAAATGCCTACAGTGTCTGTATTAGAATATGCTTTGCCTCAGAGGCCCCCCCAGGGTCCAGAAG
ATGATCGGGACCTTTCTGAACGAGCATTACCAAGGCGGTCAACTTCACCTATCATTGGCAGTCCTCCTGT
TAGAGCTGTCCCCATAGGCACCCCACCTAAACAGATGGCTGTACCCAGCTTCACCCAACAGATTCTGTGT
CCGAAGCCTGTCCATGTTCGGCCCCCAATGCCACCTCGTTATCCTGCTCCCTATGGTGAGAGGATGTCTC
CAAACCAGCTCTGCAGTGTCCCGAACTCTTCCCTCCTGGGTCACCCTTTTCCTCCTAGTGTTCCTCCTGT
TCTCAGCCCCCTCCAGAGAGCACAGCTTCTTGGAGGAGCACAGCTACAGCCTGGACGGATGTCTCCCAGC
CAGTTTGCACGGGTCCCTGGATTTGTTGGTAGTCCACTTGCTGCCATGAATCCCAAGTTGCTACAAGGGC
GAGTTGGGCAGATGCTTCCCCCAGCACCAGGCTTCCGTGCCTTCTTTAGTGCTCCACCCTCCGCTACACC
ACCTCCACAGCAGCACCCTCCTGGCCCAGGACCCCACCTGCAAAACCTAAGATCTCAGGCCCCAATGTTT
AGACCGGACACAACTCACCTCCATCCACAGCACCGTCGACTCTTGCATCAGAGACAGCAACAGAATAGAA
GTCAGCATCGGAATCTCAATGGTGCGGGAGATAGAGGAAGTCACCGGAGCAGTCATCAAGATCATCTCCG
AAAGGATCCATATGCCAATCTCATGTTGCAGCGGGAAAAGGATTGGGTCTCTAAAATCCAGATGATGCAA
CTGCAAAGCACTGATCCCTACCTGGATGATTTTTATTACCAGAATTACTTTGAAAAACTGGAGAAACTGT
CAGCTGCTGAAGAAATACAAGGTGATGGCCCTAAGAAGGAGCGCACCAAGCTTATCACCCCTCAGGTGGC
CAAACTGGAGCACGCCTATAAGCCAGTGCAATTTGAGGGCTCTTTGGGAAAGCTTACCGTTTCTAGTGTG
AATAATCCCCGAAAAATGATTGATGCTGTTGTGACATCTCGGAGTGAGGATGATGAGACAAAAGAAAAAC
AAGTTCGAGACAAGAGGAGAAAAACCCTTGTTATAATTGAGAAAACCTACAGCTTACTCCTTGATGTGGA
GGACTATGAAAGACGTTATCTCCTAAGTCTGGAAGAAGAGCGACCTGCCCTAATGGATGACAGAAAGCAC
AAAATTTGTAGCATGTATGACAACTTAAGGGGGAAATTGCCTGGACAAGAGAGGCCTAGTGATGACCACT
TTGTACAGATCATGTGTATCCGAAAAGGGAAGAGAATGGTTGCCCGTATTCTTCCTTTCCTCTCCACAGA
GCAAGCAGCTGACATTCTCATGACAACAGCCAGGAACCTCCCTTTCCTTATCAAGAAGGATGCACAAGAT
GAGGTGCTGCCATGCTTACTGAGTCCCTTCTCTCTCCTTCTCTATCATCTTCCATCAGTGAGTATCACCA
GCCTTTTGCGACAGCTAATGAACCTACCTCAAAGTGCAGCTACACCAGCACTCTCCAATCCTCACCTCAC
TGCTGTGCTCCAGAACAAGTTTGGCCTGTCACTGCTCCTCATCCTCCTGAGCCGTGGTGAAGACCTACAG
AGTTCAGACCCTGCTACAGAATCAACACAAAATAATCAGTGGACGGAGGTGATGTTCATGGCAACACGAG
AACTTCTGCGGATTCCCCAAGCAGCCCTGGCCAAGCCAATCTCTATACCTACAAACCTAGTGTCCCTCTT
TTCTCGCTATGTTGACCGGCAGAAACTGAACTTGCTGGAGACAAAACTGCAGCTAGTTCAGGGGATACGA
TAA

Translation (770 aa):
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKLPVAVNEQTGN
GERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGSLNSSIWDGSEVLRRIRGPLL
AQEMPTVSVLEYALPQRPPQGPEDDRDLSERALPRRSTSPIIGSPPVRAVPIGTPPKQMAVPSFTQQILC
PKPVHVRPPMPPRYPAPYGERMSPNQLCSVPNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPS
QFARVPGFVGSPLAAMNPKLLQGRVGQMLPPAPGFRAFFSAPPSATPPPQQHPPGPGPHLQNLRSQAPMF
RPDTTHLHPQHRRLLHQRQQQNRSQHRNLNGAGDRGSHRSSHQDHLRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGKLTVSSV
NNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYERRYLLSLEEERPALMDDRKH
KICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQD
EVLPCLLSPFSLLLYHLPSVSITSLLRQLMNLPQSAATPALSNPHLTAVLQNKFGLSLLLILLSRGEDLQ
SSDPATESTQNNQWTEVMFMATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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