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Report for CCDS26329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26329.1 Public Mus musculus 13 Vmn1r214 23 108 98 CCDS HistoryNCBI Gene:171248Re-query CCDS DB by CCDS ID:26329.1Re-query CCDS DB by GeneID:171248See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074252.4 ENSMUSP00000073868.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074252.4Link to Ensembl Protein Viewer:ENSMUSP00000073868.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000074252Re-query CCDS DB by Protein ID:ENSMUSP00000073868
Original member Current member EBI ENSMUST00000227236.1 ENSMUSP00000153728.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227236.1Link to Ensembl Protein Viewer:ENSMUSP00000153728.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227236Re-query CCDS DB by Protein ID:ENSMUSP00000153728
Original member Current member EBI ENSMUST00000227652.1 ENSMUSP00000153823.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227652.1Link to Ensembl Protein Viewer:ENSMUSP00000153823.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227652Re-query CCDS DB by Protein ID:ENSMUSP00000153823
Original member Current member NCBI NM_134214.1 NP_598975.1 Accepted alive Link to Nucleotide Sequence:NM_134214.1Link to Protein Sequence:NP_598975.1Re-query CCDS DB by Nucleotide ID:NM_134214Re-query CCDS DB by Protein ID:NP_598975Link to BLAST:NP_598975.1

Chromosomal Locations for CCDS 26329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 23034338 23035441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGCGTCTACCACTGCCTCTTGAACACAAGAAAATGCTATTATACCAACTGTGGTGCTCAGACCCATGTC
TAGCATTACTGATGCTTTCTTTAAAATGTATTTTCATCCTGCATACAAGGAAGGAAGAAATGATTTGGAA
GTTAATTAAGAAAATACTTTTTCTCTTCATGACCATGCTTGGCATTCTGGGGAACATGTTTGTTTCTGTG
AATTTTATGCTCAGTTGGTGGGGAAGCCCTGAGAAGAAATCCGTACACCTTATTCTCATCCACTTGGCTT
TTACAAACATCATAATCCTTCTTACAAAAGGATTGCAAAAGACTATTGTAGCTTTTGGTTTGAGAAACTT
CCTAAATAACTTAGGCTGTAAGATCATTGTTTACATGGAGAGGGTGGCCCATGGCCTCTCCCTCTGCACC
AGCAGTCTCCTCACTGTGGTCCAGGCCATCATCATCAGCCCCAGAGCATCTGGATGGAGGAGGCTCAGGC
CAAAGTCTGTACGGCACATCCTTCCATTCTTCCTGTTCTTTTGGATACTCAATGCATTAATAAGTATGAA
CCTAATCAATTCCATCACAAGTACAAGACTGAATATATCACAACTTAAGAGTGATGACAACTATTGTTAT
TTTATGTTACCAAGTCAGAAAATCAAATGGATTGTTCTCCCTCTCATGGTCCTGAGAGATGCAGTGTTTC
AGGGTGCCATGGGAGGGGCCAGTGGCTACATGGTATTTCTTCTCCACAAGCACCACCAGCATGTCCTCTA
CCTTCAGAACTCCAAGCTTCTCTACAGAACTCCCCCTGAGCTGAGAGCTGCCCAGAGTGTCCTCCTTCTG
ATGCTCTGTTTTGTTTTCTTCTACTGGACTGATTGTGCCTTTTCTCTAGTTTTAAGTCTCTCCTCAAGGG
ACAAAACCTTGACAGTAAATCCTCGAGAACTTTTGACCCTTGGTTATGCAACGTTTAGTCCCCTGGTGCT
GATTCACAGGGATGGGCTTCTGTTTGAATGTTGTCATGCTCAGTTGAAGAAACTGAGAAATTGTCTCTCA
TTTATATGTTCAACAAGGAAGAAGAAACTCTCAGTTCTGCAACACTGTGGGTAA

Translation (367 aa):
MRLPLPLEHKKMLLYQLWCSDPCLALLMLSLKCIFILHTRKEEMIWKLIKKILFLFMTMLGILGNMFVSV
NFMLSWWGSPEKKSVHLILIHLAFTNIIILLTKGLQKTIVAFGLRNFLNNLGCKIIVYMERVAHGLSLCT
SSLLTVVQAIIISPRASGWRRLRPKSVRHILPFFLFFWILNALISMNLINSITSTRLNISQLKSDDNYCY
FMLPSQKIKWIVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQHVLYLQNSKLLYRTPPELRAAQSVLLL
MLCFVFFYWTDCAFSLVLSLSSRDKTLTVNPRELLTLGYATFSPLVLIHRDGLLFECCHAQLKKLRNCLS
FICSTRKKKLSVLQHCG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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