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Report for CCDS44599.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44599.2 Public Homo sapiens 11 SMTNL1 24 110 108 CCDS HistoryNCBI Gene:219537Re-query CCDS DB by CCDS ID:44599.2See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 44599.1
This CCDS ID was withdrawn because there are no full-length transcripts representing it, and the exon combination of the gene is unclear.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 44599.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000527972.6 ENSP00000432651.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000527972.6Link to Ensembl Protein Viewer:ENSP00000432651.1Re-query CCDS DB by Nucleotide ID:ENST00000527972Re-query CCDS DB by Protein ID:ENSP00000432651
Original member Current member NCBI NM_001105565.3 NP_001099035.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001105565.3Link to Protein Sequence:NP_001099035.2Re-query CCDS DB by Nucleotide ID:NM_001105565Re-query CCDS DB by Protein ID:NP_001099035Link to BLAST:NP_001099035.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001099035.2 494 A8MU46 494 100% 0 0

Chromosomal Locations for CCDS 44599.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 57542643 57543374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57543624 57543756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57543869 57543920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57545881 57546036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57546233 57546347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57546501 57546652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 57549968 57550112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGGAGCAGAAGGAAGGGAAGCTCTCTGAGGATGGGACCACCGTCTCCCCAGCTGCGGACAACCCTGAGA
TGTCAGGAGGTGGAGCCCCTGCAGAGGAGACCAAAGGCACAGCTGGAAAGGCCATCAATGAGGGGCCTCC
CACTGAGTCAGGAAAGCAGGAAAAGGCACCAGCCGAGGACGGCATGTCAGCAGAACTCCAGGGGGAAGCA
AATGGATTAGATGAGGTCAAAGTGGAATCTCAGAGGGAGGCTGGTGGGAAAGAGGATGCTGAGGCTGAAC
TTAAAAAGGAGGATGGTGAGAAGGAAGAGACCACTGTGGGTTCTCAGGAGATGACTGGCAGGAAAGAAGA
GACCAAATCTGAACCCAAAGAGGCTGAGGAAAAGGAGAGCACGCTGGCCTCTGAGAAGCAGAAGGCTGAG
GAGAAAGAGGCCAAACCTGAATCTGGGCAGAAAGCCGATGCCAATGACAGAGACAAGCCTGAACCTAAGG
CAACAGTTGAGGAGGAGGACGCCAAGACAGCCTCTCAGGAGGAGACAGGCCAGAGGAAAGAGTGCAGCAC
TGAACCCAAGGAGAAGGCTACTGATGAAGAGGCCAAGGCTGAATCGCAGAAGGCTGTTGTGGAGGATGAG
GCTAAGGCTGAACCCAAGGAGCCCGATGGGAAAGAGGAGGCCAAACATGGTGCAAAAGAGGAGGCTGATG
CAAAAGAGGAGGCGGAGGATGCAGAGGAGGCAGAGCCAGGCAGTCCCAGCGAAGAGCAGGAGCAGGACGT
GGAAAAAGAGCCAGAGGGAGGGGCAGGGGTGATTCCCAGCTCCCCAGAGGAGTGGCCTGAGAGCCCCACT
GGGGAGGGGCACAACCTCAGCACAGATGGGCTGGGTCCAGACTGTGTAGCTTCCGGACAGACCAGTCCTT
CAGCCAGTGAGTCTTCACCCAGCGACGTGCCCCAGAGTCCCCCTGAGTCCCCTTCCTCAGGGGAGAAGAA
GGAGAAGGCACCAGAGCGCAGGGTATCAGCCCCTGCTCGGCCCCGGGGGCCCCGGGCACAGAACCGCAAA
GCCATCGTGGACAAGTTTGGCGGGGCAGCTTCCGGCCCCACGGCCTTGTTCCGCAACACTAAGGCAGCCG
GGGCAGCCATTGGTGGTGTCAAGAACATGCTCTTGGAGTGGTGCCGAGCCATGACAAAAAAATACGAGCA
TGTGGACATCCAGAACTTCTCCTCCAGCTGGAGCAGTGGTATGGCCTTCTGTGCCCTCATCCACAAGTTC
TTCCCTGACGCCTTTGACTACGCAGAGCTGGATCCCGCAAAGCGCCGGCACAACTTCACCCTGGCCTTCT
CCACAGCAGAGAAACTGGCTGACTGTGCTCAGCTGCTGGACGTGGATGACATGGTGCGGTTGGCTGTGCC
CGACTCCAAGTGCGTCTACACATACATCCAGGAACTGTACCGCAGCCTTGTGCAGAAAGGACTGGTGAAG
ACCAAGAAGAAGTGA

Translation (494 aa):
MEQKEGKLSEDGTTVSPAADNPEMSGGGAPAEETKGTAGKAINEGPPTESGKQEKAPAEDGMSAELQGEA
NGLDEVKVESQREAGGKEDAEAELKKEDGEKEETTVGSQEMTGRKEETKSEPKEAEEKESTLASEKQKAE
EKEAKPESGQKADANDRDKPEPKATVEEEDAKTASQEETGQRKECSTEPKEKATDEEAKAESQKAVVEDE
AKAEPKEPDGKEEAKHGAKEEADAKEEAEDAEEAEPGSPSEEQEQDVEKEPEGGAGVIPSSPEEWPESPT
GEGHNLSTDGLGPDCVASGQTSPSASESSPSDVPQSPPESPSSGEKKEKAPERRVSAPARPRGPRAQNRK
AIVDKFGGAASGPTALFRNTKAAGAAIGGVKNMLLEWCRAMTKKYEHVDIQNFSSSWSSGMAFCALIHKF
FPDAFDYAELDPAKRRHNFTLAFSTAEKLADCAQLLDVDDMVRLAVPDSKCVYTYIQELYRSLVQKGLVK
TKKK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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