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Report for CCDS9326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9326.1 Public Homo sapiens 13 GSX1 24 110 108 CCDS HistoryNCBI Gene:219409Re-query CCDS DB by CCDS ID:9326.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9326.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000302945.3 ENSP00000304331.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000302945.3Link to Ensembl Protein Viewer:ENSP00000304331.2Re-query CCDS DB by Nucleotide ID:ENST00000302945Re-query CCDS DB by Protein ID:ENSP00000304331
Original member Current member NCBI NM_145657.3 NP_663632.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145657.3Link to Protein Sequence:NP_663632.1Re-query CCDS DB by Nucleotide ID:NM_145657Re-query CCDS DB by Protein ID:NP_663632Link to BLAST:NP_663632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663632.1 264 Q9H4S2 264 100% 0 0

Chromosomal Locations for CCDS 9326.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 27792691 27793102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 27793566 27793948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (795 nt):
ATGCCGCGCTCCTTCCTGGTGGACTCGCTAGTGCTGCGCGAGGCGGGCGAGAAGAAGGCGCCCGAGGGCA
GCCCGCCGCCGCTCTTCCCCTACGCTGTGCCCCCGCCGCACGCGCTGCACGGTCTCTCGCCTGGCGCCTG
CCACGCGCGCAAGGCTGGGCTGCTGTGCGTGTGCCCGCTCTGCGTCACCGCCTCGCAGCTGCATGGGCCC
CCCGGGCCGCCCGCGCTGCCTCTACTCAAGGCTTCCTTCCCACCCTTCGGCTCGCAGTACTGCCACGCGC
CCCTGGGCCGCCAGCACTCTGCTGTGTCGCCCGGGGTCGCTCACGGCCCGGCCGCCGCTGCTGCTGCCGC
CGCGCTCTACCAGACCTCCTACCCGCTGCCTGACCCCAGGCAGTTCCACTGCATCTCTGTGGACAGCAGC
TCTAACCAGCTGCCCAGCAGCAAGAGGATGCGCACGGCTTTCACCAGCACGCAGCTGCTAGAGCTGGAGC
GCGAGTTCGCTTCTAATATGTACCTGTCCCGCCTACGTCGCATCGAGATCGCGACCTACCTGAATCTGTC
CGAGAAGCAGGTGAAGATCTGGTTTCAGAACCGCCGAGTGAAGCACAAGAAGGAGGGCAAGGGCAGCAAC
CATCGTGGCGGCGGCGGCGGGGGTGCCGGTGGTGGCGGGAGCGCACCGCAAGGCTGCAAGTGCGCATCGC
TCTCCTCAGCCAAGTGCTCCGAGGATGACGACGAATTGCCCATGTCTCCGTCCTCCTCAGGGAAGGACGA
CCGGGATCTTACGGTCACTCCCTAG

Translation (264 aa):
MPRSFLVDSLVLREAGEKKAPEGSPPPLFPYAVPPPHALHGLSPGACHARKAGLLCVCPLCVTASQLHGP
PGPPALPLLKASFPPFGSQYCHAPLGRQHSAVSPGVAHGPAAAAAAAALYQTSYPLPDPRQFHCISVDSS
SNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGSN
HRGGGGGGAGGGGSAPQGCKCASLSSAKCSEDDDELPMSPSSSGKDDRDLTVTP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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