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Report for CCDS27182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27182.1 Public Mus musculus 14 Arl11 23 108 98 CCDS HistoryNCBI Gene:219144Re-query CCDS DB by CCDS ID:27182.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27182.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055159.7 ENSMUSP00000055447.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055159.7Link to Ensembl Protein Viewer:ENSMUSP00000055447.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000055159Re-query CCDS DB by Protein ID:ENSMUSP00000055447
Original member Current member EBI ENSMUST00000224727.1 ENSMUSP00000153531.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000224727.1Link to Ensembl Protein Viewer:ENSMUSP00000153531.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000224727Re-query CCDS DB by Protein ID:ENSMUSP00000153531
Original member Current member NCBI NM_177337.3 NP_796311.2 Accepted alive Link to Nucleotide Sequence:NM_177337.3Link to Protein Sequence:NP_796311.2Re-query CCDS DB by Nucleotide ID:NM_177337Re-query CCDS DB by Protein ID:NP_796311Link to BLAST:NP_796311.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796311.2 176 Q6P3A9 176 100% 0 0

Chromosomal Locations for CCDS 27182.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 61310743 61311273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (531 nt):
ATGGGCTCTGTGAATTCCAGAGGTCACAAGGCAGAGGCCCAGGTGGTAATGATGGGCCTCGACTCTGCTG
GCAAGACCACAATTCTGTACAAACTGAAAGGAAACCAGCTGGTGGACACCCTACCCACTGTTGGTTTTAA
TGTAGAGCCTCTTGAGGCTCCTGGACATGTGTCACTGACTCTCTGGGACATTGGGGGACAGACCCAGCTC
AGAGCTACCTGGAAGGACTACCTGGAAGGCATCGACCTCCTTGTGTACGTGCTGGACAGCACAGATGAAG
CCCGCTTGCCTGAGGCAGTGGCTGAGCTCAAGGAAGTCCTGGAAGACCCCAACATGGCCGGCGTCCCCTT
CTTGGTACTGGCCAACAAGCAGGAGGCTCCTGGTGCTCTGCCGTTGCTTGAAATCAGAAACAGGCTGGGC
CTGGAAGGGTTCCAAAAGCATTGCTGGGAGCTGCGGGCTTGCAGCGCTCTCACAGGACAGGGGCTGCAGG
AAGCCCTGCAGAGCCTGCTGCATTTGCTGAAGTCCCGCTGA

Translation (176 aa):
MGSVNSRGHKAEAQVVMMGLDSAGKTTILYKLKGNQLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQTQL
RATWKDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLEDPNMAGVPFLVLANKQEAPGALPLLEIRNRLG
LEGFQKHCWELRACSALTGQGLQEALQSLLHLLKSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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