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Report for CCDS36785.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36785.1 Public Mus musculus 13 Arl15 23 108 98 CCDS HistoryNCBI Gene:218639Re-query CCDS DB by CCDS ID:36785.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36785.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000091201.6 ENSMUSP00000088740.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000091201.6Link to Ensembl Protein Viewer:ENSMUSP00000088740.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000091201Re-query CCDS DB by Protein ID:ENSMUSP00000088740
Original member NCBI NM_172595.4 NP_766183.1 Updated not alive Link to Nucleotide Sequence:NM_172595.4Link to Protein Sequence:NP_766183.1Re-query CCDS DB by Nucleotide ID:NM_172595Re-query CCDS DB by Protein ID:NP_766183
Current member NCBI NM_172595.5 NP_766183.1 Accepted alive Link to Nucleotide Sequence:NM_172595.5Link to Protein Sequence:NP_766183.1Re-query CCDS DB by Nucleotide ID:NM_172595Re-query CCDS DB by Protein ID:NP_766183Link to BLAST:NP_766183.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766183.1 204 Q8BGR6 204 100% 0 0

Chromosomal Locations for CCDS 36785.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 113794649 113794696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113922247 113922391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113934064 113934123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113967582 113967790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 114154704 114154856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGTCTGATCTCCGGATAACTGAGGCGTTTCTGTACATGGATTATCTGTGTTTTCGAGCGCTTTGCTGCA
AGGGACCACCACCTGCGCGCCCTGAATATGACTTGGTTTGCATAGGTCTCACGGGCTCCGGGAAAACCAG
CCTGCTGTCCGAGCTCTGCAGCGAAAGCCCGGAGAACGTTGTGTCGACCACAGGTTTTAGTATAAAGGCA
GTGCCATTCCAGAATGCCGTTTTGAATGTAAAAGAACTTGGAGGAGCTGACAATATCCGGAAATACTGGA
GCCGCTACTACCAAGGATCTCAAGGGGTCATATTCGTATTAGACAGTGCCTCTTCAGAGGATGACTTAGA
AACTGCTAGGAACGAACTGCACTCCGCTCTCCAGCACCCACAGCTATGCACTTTACCCTTTTTGATATTG
GCCAATCATCAAGACAAGCCAGCAGCTCGCTCAGTACAAGAGATCAAAAAGTATTTTGAACTTGAACCAC
TGGCCCGTGGAAAGCGCTGGATCCTGCAGCCCTGCTCTCTGGATGATGTGGACACACTGAAGGACAGCTT
CTCCCAGCTCATAAACTTGTTAGAAGAAAAAGACCACGAGGCAGTGAGAATGTGA

Translation (204 aa):
MSDLRITEAFLYMDYLCFRALCCKGPPPARPEYDLVCIGLTGSGKTSLLSELCSESPENVVSTTGFSIKA
VPFQNAVLNVKELGGADNIRKYWSRYYQGSQGVIFVLDSASSEDDLETARNELHSALQHPQLCTLPFLIL
ANHQDKPAARSVQEIKKYFELEPLARGKRWILQPCSLDDVDTLKDSFSQLINLLEEKDHEAVRM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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