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Report for CCDS51266.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51266.1 Public Mus musculus 4 Skint7 23 108 98 CCDS HistoryNCBI Gene:328505Re-query CCDS DB by CCDS ID:51266.1Re-query CCDS DB by GeneID:328505See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51266.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000163281.1 ENSMUSP00000127347.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163281.1Link to Ensembl Protein Viewer:ENSMUSP00000127347.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000163281Re-query CCDS DB by Protein ID:ENSMUSP00000127347
Original member Current member NCBI NM_001142775.1 NP_001136247.1 Accepted alive Link to Nucleotide Sequence:NM_001142775.1Link to Protein Sequence:NP_001136247.1Re-query CCDS DB by Nucleotide ID:NM_001142775Re-query CCDS DB by Protein ID:NP_001136247Link to BLAST:NP_001136247.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001136247.1 395 A7XV04-1 395 100% 0 0

Chromosomal Locations for CCDS 51266.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 111977421 111977496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111980103 111980450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111981935 111982216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111984071 111984178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111984751 111984873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 111987930 111988180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGATGAAGCCTGAGTTCTTTTGCTTTTCTGGATTCTGTGTGTACTTTCTTTTTCTGCAAGTGGTAGTAT
CTTCAGAGAAACTGAGGGTAACTACTCCCACAAGACACCTGTTAGCTAGAGTAGGAGGCCAGGCTGAGCT
CAGCTGCCAGGTGATCCCACCACACAGTGTGATGCATATGGAGGTACGCTGGTTCAGGAGTGGCCATTCC
CAACCTGTTTACCTATACAGAGGTGGCCATAAAATGAGTGAAGAAGCTGCTCCTGAATATGCAAATCGTA
CAGAGTTTGTGAAGGAGGCCATTGGAGAAGGCAAAGTGTCCCTCCGAATTCATAATATAAACATTTTGGA
TGATGGACCTTACCAATGTTCATTTAATGGTAGTGGCTTCATTGATGCGGCTATCATGAACCTCAATGTG
ACAGCAGTTGGATTGGAGACAGAGATACATGTTCAGGCTCCTGATGCTGATGGAGTCATGGTGGAGTGTA
ATTCAGGAGGGTGGTTCCCAAGGCCCCAAATGGAGTGGAGAGATAGTAAGGGGGCAACACTTCCGCACTC
ATTAAAATCATATTCACAGGATGAAGCCAGATTTTTCTATATGAAGATGACTCTTCTCCTCACAAACATG
TCACATGGCAGCATCATTTGCTGTATTTTCAACCCTGTAACAGGTGAAGAGAAGCAAACAAGTATCATTC
TAGCAAATGAACTCTTTAATCGGGACCGTATTTGGATGGAAAGTTTAGCTTCCATTGTATGGATAATGCT
CTCTGTATATATTCTATATATAATCTGCTTTTACTGGAGAACAGGGTGTGCATCTGGATGCCTGTCTAAA
TGTTTTTGTGTGGTGACCTCCTGGCCTGTTCAAATAGTGCATTTATTATTCTGTACTGGAACATTCTTTG
CAATATATTTACCTCACCGCAGCAGAGTCTCTCTTTCAGATCCTCAGTTTCCCTTATACAACAACTGGAT
AACTGAATTGCTGTTTGTGATACTTTTTCTGACAATATGTTTTGCCTTGCCAATCATTCTCTTATTCATA
CAATTTCAATTCACAAGTCTGACTAAATGGGAGAAGAACAAGGATGGCATCATGGACCAACCAAGACTGG
GAAAAGCCCATGAAACCTCAAGCCTATATAGAAAAAAAACAGGAAAAAGCTGGGAGCAGGAGAAGTGA

Translation (395 aa):
MMKPEFFCFSGFCVYFLFLQVVVSSEKLRVTTPTRHLLARVGGQAELSCQVIPPHSVMHMEVRWFRSGHS
QPVYLYRGGHKMSEEAAPEYANRTEFVKEAIGEGKVSLRIHNINILDDGPYQCSFNGSGFIDAAIMNLNV
TAVGLETEIHVQAPDADGVMVECNSGGWFPRPQMEWRDSKGATLPHSLKSYSQDEARFFYMKMTLLLTNM
SHGSIICCIFNPVTGEEKQTSIILANELFNRDRIWMESLASIVWIMLSVYILYIICFYWRTGCASGCLSK
CFCVVTSWPVQIVHLLFCTGTFFAIYLPHRSRVSLSDPQFPLYNNWITELLFVILFLTICFALPIILLFI
QFQFTSLTKWEKNKDGIMDQPRLGKAHETSSLYRKKTGKSWEQEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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