CCDS Report for Consensus CDS

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Report for CCDS49241.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
49241.1	Public	Mus musculus	13	Ofcc1	23	108	98

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49241.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000054635.7	ENSMUSP00000062217.7	Accepted	alive
		NCBI	NM_172143.2	NP_742155.2	Accepted	alive

Chromosomal Locations for CCDS 49241.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)

Genome Browser links:

Chromosome	Start	Stop
13	40001889	40001916
13	40003968	40004107
13	40015297	40015503
13	40072649	40072808
13	40087785	40087948
13	40094575	40094827
13	40097010	40097228
13	40142747	40142871
13	40148574	40148656
13	40176286	40176484
13	40180411	40180674
13	40206613	40206843
13	40208737	40208857
13	40214450	40214526
13	40255438	40255604
13	40263561	40263647
13	40280372	40280548
13	40280847	40280913
13	40287972	40287983

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGGATAAAGAGAAGTTTCAGCAGAAGGCTGTGAAGCAAACTAAGCAGAAGAAATCCACGTCGGCTGAAT TTCTGATGGTTAAAGAATACACGGACGCTACCGAAGGTGCCGGGAATCCAGGTTTTAACATGAGCAGCCC AGAACTCCCAGCACATCAGACTCCACAAGAGAAAGTTGTGAGACATGACATGCTGGATCACACCCTTGCA ACTCATCAACAAAAATCCAGGCTGCCAGCTTCAGCGGGACCCAAAGGAAATGAATACAGCAGAAATTACT TTGACCCACTGACGGAGGAGGAAATAAACTCAAGGCAGTGCCGGATGGAGGTCAGCAGACAGGATGGAAG GTCAAAGGTGGAGACACTGGATCAGGAATCACCCAGACGTTCCACTGAGAGCCTGGATACCTGCAAAGAG GATGAGGAAGATGCTCCTGGGTACACTGAGGACTCTGAGAGGCAAGCTCAGAGAGGCGCTGTTCTGCTTG CAGGTTCTTCATCAGGACAGGATTTGGAATTTGAAAGAAAAGGACTCAGCCAGAACATTCCCATGTCATG TTTAAAGAAAGAAAAAGCATTCAAGAAAGCTCCGAGTCAGCTGTGCACTGCAGACGGGAATCCTTACACA AAGGCTAGTGACAAGGGGCAACGCTCATTTCCAGAAGTGACTAAAGAATCTGGAAGGACAGAAGGAACTT GCTGGAAGGGTGAGCAGCCTCAGTTGCCTAGTCTACAAATACAGATCAGATGTATTAGGGGCCTCAAGGA CAAGGCTCCCCAAGGCTCCTACCTCCTCCGAGTGTCTCTGCTCAGTCAGCTGGGGAGCTGTGCCTCACAG GAGTGTCAAGCTGAGCAGCTGAAGACAAGGACGTGCCCAGTTCTTCATGGTGGCAACTTTTATGATGTGG GGCTCTATTTCCATGAAAGCGTTTCTGTGGTACTTCCTCAAAGGAAAGCCGTGAAGCCTGGCTTGTCTTT CTTGTTTGAACTCTTCCTTCTCCATGGAACATATGCTTACAATGACCTGATTATGGGCTGGGCAGTCTTT CCTGTATGTGACAACAACTTCCATATAGTAGAGGGAAAATTCAAGTGTCCCCTTCTCCGAGGACCTTATG ACCAAAAACTGGACAGCTTCAGAAAAATAGAAAATTTGATTTGCCAAGACTTGGACCAGTGGCTGTGCAA TCTATATTTTAAGGTAATTAAAACTCCTTTGCATTTGGATGATCAAAAAAGCCCTGAGAGCCGCAGGCAG CTTTCTCCAGAACGTCCAGTGTGCTTAATGGTGGAAGCAGAGAACACGGAATTCGATTTGGATAATACAG CCGGTCCTTCAAAGAAAGAACCGCCAGGAAATGTTCATGCTGTAATGGGCGGTGCGATCCACTCTTCTCA AGGGAATATTTCTAATAAAACTGACTCCTGCCCTAGGGGTTGTGATCTGTGCCTCTTCAAAGAAGCCCGT GACTTGCAAGCTATGGGGAATAGTTTGGCTGCTCAATCTGTGAAGGAAAGATCTACTGTGTGGAGACCTG AAGATCCTGAAGACTATCCGGGGGATGTGTCTTACCTAGAGGAACTGGAGAAATATCAGTTTTCCGTTTG CTGCCCTTCAGGTGTAGATGGCTGTGGATCTGGAAGGTTGTCCAAGCACCTCCACTTCACATTGATGGCC TTATTTTCAGAACTTGAATTAGCTCAATGGCAAAGTCAGAGCTTCTGGTACATCCTTCTGATGATGGCAT CTCTCTGGTTCGTGAGGCTCTACCTGCATTACCTGGGCCAGTGGCTTTTCCTCTGGGTCCTCTCCACTCC AGTTACAAAATTCCAGTTTCACTCCTACACTGTTGAGCTCTGCTACCTGACTTCTTCACTTCATGTCGGA GAAGAGCTGGCTGTGATTGTATTGGGGCCCTTAGCTCTAAACACAATCACGTTCCCCTTGCTTCTGATCA GATGGGGCTGTCAGCTACTGTTTTCCTCCTGCCCAGATGCCTTGTCAAAGCTAATCATCACGATGGGACT ATGGACAGTTCTAGACCCATTGGCGGTGTTTCTAGTGGATGCTTTCCTGGGGCGACTTGCACATAATGGG GAGACACCTATTGCAGATGCAGCTAAACTCTACTGGATGTTCCTGAGAACCAAGCAACCAGCCATCCTCG GTGCTCTGATCACAGTGGTAGTTTACACTCTGCTGTTTGTCATCTCCTCCTTGATTTTGTACTTGTATTG CCTCAGGTTGTACAATGACTCTTGGGTATTAGATGCATTTCAGAGAATCCACAGTGAAGAAGGCAAGTTC TTCATACCACATGATTTGGAAATTTCCAATCAGGAGCTGAGTCACATCGTGAAAAGATCTGAGCAGTGGA GAGGGATCCATGGTGAGAGAAGGAAGGTGGCAGTGCACGATTACATCTGCAAAAGCCATGACACCGAGTC CAAGGTCTCCAGCTGTGACCCCCACCATCAGGATGAAAGTTTTGAGTCTGCAGTTGGTCCAAGAAGGGTT ACTTCCCACATATCAGTACATACTGTTTATCCCAATGGGTTTCAAGAGTTGTATCGCCATTTTCTCAGGC TCCCGGATGGCGCCATCATTGAGGTGTTTGGTGACATCAGTGCCTTGAGATTTGTCCCCAGTGAAGTGAT CACCGCTATTGAGGAACACATAAGAGAAATGGACACTGTGCAGAGAGAAATCTTTGCTTCTTACCAAGAG AAAGAAGTCTCTGAGCATAAAAGGAGATCATTAACCCGAGTGGAAAAATGA
Translation (926 aa):
MDKEKFQQKAVKQTKQKKSTSAEFLMVKEYTDATEGAGNPGFNMSSPELPAHQTPQEKVVRHDMLDHTLA THQQKSRLPASAGPKGNEYSRNYFDPLTEEEINSRQCRMEVSRQDGRSKVETLDQESPRRSTESLDTCKE DEEDAPGYTEDSERQAQRGAVLLAGSSSGQDLEFERKGLSQNIPMSCLKKEKAFKKAPSQLCTADGNPYT KASDKGQRSFPEVTKESGRTEGTCWKGEQPQLPSLQIQIRCIRGLKDKAPQGSYLLRVSLLSQLGSCASQ ECQAEQLKTRTCPVLHGGNFYDVGLYFHESVSVVLPQRKAVKPGLSFLFELFLLHGTYAYNDLIMGWAVF PVCDNNFHIVEGKFKCPLLRGPYDQKLDSFRKIENLICQDLDQWLCNLYFKVIKTPLHLDDQKSPESRRQ LSPERPVCLMVEAENTEFDLDNTAGPSKKEPPGNVHAVMGGAIHSSQGNISNKTDSCPRGCDLCLFKEAR DLQAMGNSLAAQSVKERSTVWRPEDPEDYPGDVSYLEELEKYQFSVCCPSGVDGCGSGRLSKHLHFTLMA LFSELELAQWQSQSFWYILLMMASLWFVRLYLHYLGQWLFLWVLSTPVTKFQFHSYTVELCYLTSSLHVG EELAVIVLGPLALNTITFPLLLIRWGCQLLFSSCPDALSKLIITMGLWTVLDPLAVFLVDAFLGRLAHNG ETPIADAAKLYWMFLRTKQPAILGALITVVVYTLLFVISSLILYLYCLRLYNDSWVLDAFQRIHSEEGKF FIPHDLEISNQELSHIVKRSEQWRGIHGERRKVAVHDYICKSHDTESKVSSCDPHHQDESFESAVGPRRV TSHISVHTVYPNGFQELYRHFLRLPDGAIIEVFGDISALRFVPSEVITAIEEHIREMDTVQREIFASYQE KEVSEHKRRSLTRVEK

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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