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Report for CCDS29105.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29105.2 Public Mus musculus 18 Tpgs2 23 108 98 CCDS HistoryNCBI Gene:66648Re-query CCDS DB by CCDS ID:29105.2Re-query CCDS DB by GeneID:66648See the combined annotation on chromosome 18 in Sequence Viewer

Public Note for CCDS 29105.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29105.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115817.2 ENSMUSP00000111484.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115817.2Link to Ensembl Protein Viewer:ENSMUSP00000111484.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115817Re-query CCDS DB by Protein ID:ENSMUSP00000111484
Original member Current member NCBI NM_001004361.2 NP_001004361.2 Accepted alive Link to Nucleotide Sequence:NM_001004361.2Link to Protein Sequence:NP_001004361.2Re-query CCDS DB by Nucleotide ID:NM_001004361Re-query CCDS DB by Protein ID:NP_001004361Link to BLAST:NP_001004361.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001004361.2 296 Q66JT5 296 98.9865% 0 3

Chromosomal Locations for CCDS 29105.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 25138906 25139139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25140446 25140606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25141521 25141637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25149114 25149242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25151200 25151287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25158244 25158323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 25168527 25168608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (891 nt):
ATGGAGGAGACAACGCCCCCACTGCAAGCCGGCAGCAAGCCGCACCTTGAGAAGTTGACCCTAGGCGTCA
CTCGCATCCTGGAATCTTCCCCAGGTGTGACCGAGGTGAGCATAATAGAAAAGCTGCCTGCTGAGCGTCA
TATGATTTCTTCATGGGAACAGAAAAACAATTGTGTGATGCCTGAGGATGTGAGAAACTTCTACTTGATG
ACCAATGGTTTTCACATGACCTGGAGTGTGAAGCTAGATGAGCACATTATTCCACTGGGAAGCATGGTGA
TTAACGGCATTTCAAAACTGACTCAGCTCATCCAGTCTTCTGTGTACTCACTTCCTAATGCACCAACTCT
GGCAGACCTAGAGGACGATACTCAAGAAGGAAATGAAGACCACCAGCTAGAGAAGCCTCACTTTGACTGT
CGCAGTGCAATATTTGAGCTGGATTCATGCAATGGGAATGGGAAAGTTTGCCTCGTCTACAAAAATGGGA
AACCTGGGTTAGCTCATGACACTGAGATATGGTTCCTGGACAGAGCATTATACTGGCACTTTCTCACGGA
TACCTTTACCGCCTATTACCGCCTGCTCATCACCCACCTGGGCCTGCCCCAGTGGCAGTATGCCTTTACC
AGCTATGGCATTAGCCCACAGGCCAAGCAATGGTTCAGTATGTACAAACCCATCACCTACAACACAAGCC
TGCTCACAGAAGAGTCCGACAACTTTGTGAACAAGCTAGACCCCAGCAAAGTGTTCAAGAGCAAGAACAA
GATTTTAATCCCAAAAAAGAAAGGGCCTGTACCACCTGCCAGTGGTCAGAAAGGGCCTGGGCCCTTACCT
CCTCCTACCTCTAAGCCTACCACAGGCTCTGGAAATCCTGTCCGAAAATAA

Translation (296 aa):
MEETTPPLQAGSKPHLEKLTLGVTRILESSPGVTEVSIIEKLPAERHMISSWEQKNNCVMPEDVRNFYLM
TNGFHMTWSVKLDEHIIPLGSMVINGISKLTQLIQSSVYSLPNAPTLADLEDDTQEGNEDHQLEKPHFDC
RSAIFELDSCNGNGKVCLVYKNGKPGLAHDTEIWFLDRALYWHFLTDTFTAYYRLLITHLGLPQWQYAFT
SYGISPQAKQWFSMYKPITYNTSLLTEESDNFVNKLDPSKVFKSKNKILIPKKKGPVPPASGQKGPGPLP
PPTSKPTTGSGNPVRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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