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Report for CCDS25753.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25753.1 Public Mus musculus 11 Lrrc45 23 108 98 CCDS HistoryNCBI Gene:217366Re-query CCDS DB by CCDS ID:25753.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25753.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026139.13 ENSMUSP00000026139.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026139.13Link to Ensembl Protein Viewer:ENSMUSP00000026139.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026139Re-query CCDS DB by Protein ID:ENSMUSP00000026139
Original member Current member NCBI NM_153545.2 NP_705773.2 Accepted alive Link to Nucleotide Sequence:NM_153545.2Link to Protein Sequence:NP_705773.2Re-query CCDS DB by Nucleotide ID:NM_153545Re-query CCDS DB by Protein ID:NP_705773Link to BLAST:NP_705773.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705773.2 670 Q8CIM1 670 100% 0 0

Chromosomal Locations for CCDS 25753.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120714309 120714528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120714918 120714979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120715150 120715220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120715421 120715599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120715806 120715934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120717056 120717168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120717480 120717538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120717825 120717902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120718037 120718172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120718244 120718321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120718442 120718553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120718650 120718720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120719040 120719132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120719466 120719558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120719934 120720107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120720186 120720333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120720618 120720814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2013 nt):
ATGGAGGAGTTCCGGCGCTCCTACAACCGCCTCTGCGAGGAGAGTGGGGCTGAGCCCCAGGAGGCTGTTC
TGCAGCAACTGCACCAGCTTCCGAAGGGCGGACTGGACCTGACTACTCAGAGCCTGACGGTGGAGACCTG
CAGGGCCCTCGGCAAGCTGCTGCATAAGGAGACGCTGTTGAAGGAGCTTGTCCTCAGCGACTGCATGCTG
AGTGAAGAAGGGTCCACACTGCTGTTCCAAGGGCTGTGTGCCAACACCAGTGTGCAGCATCTGGATCTAA
AGGGCAACAACCTCCGAGCTACAGGAGCTGAGGCTCTGGGAAAGCTCCTTCGACAGAACAAGTCTATTCA
GAGCCTCACGCTGGAGTGGAACAACCTTGGCACGTGGGAAGATGCCTTTGCCACCTTCTGTGGGGGTCTG
GCAGCCAATAGTGCCCTGCGGCAGCTGGACCTCCGAAACAACCAGATCAGTCACAAGGGAGCAGAGGAAC
TGGCCCTGGCCCTGAAGGGCAACACCACCCTCCAACAGCTGGACCTGCGCTGGAATAACATTGGCCTCCT
GGGGGGCCGGGCTCTGGTGAACTGTCTCCCCAGCAACAGAACCCTGTGGAAGCTGGACCTGGCTGGGAAC
AACATCCCTGGTGACATCCTGAGAGCCGTGGAGCAAGCCATGGACCACAACCAGGACCGACTCACTGCCT
TTCGGGAGAACCAAGCACGCACCAAGATCCTTAGCAAGGAAGTTCAACACCTCCAGGAGGAGAAGTCCAA
GCAGTTTCTGGATTTGATGGAGACAATAGACAAGCAACGAGAAGAGATGGCCAGAGATAGCCGGGCATCA
GCAGTACGGGTTGGGCAGCTTCAGGAAGCCCTCAACGAGAGGCAGTCCATCATCAATGCTCTCAAAGCCA
AACTGCAGATGACAGAGGCTGCTCTGGCTCTGTCAGAACAGAAGGTCCGGGACCTGGGGGAACTGCTGGT
CGCCGGAGACCAGGAACGGCAGAGCCTGTCCCAAAGACATGAGAAGGAACGCAAGCTGGAGCGGCAGGAA
GCTGCAGATCGGGAGTCCAAGTTACTCAGGGACCTGTCTGCTGCCAGCGAAAAGAACCTGCTGCTTAGAA
GCCAGGTGGATGAGTTGGAGCGGAAGGCGAGGTCACAGCAGGAGCAGCTGTTTCTGACCAAGCAGGAGCT
GACTAACACGTCGGCCGAGTTGAAGATCCGTGCTATTCAGGCTGAGGAGCGCTTGGATGTGGAGAAGAGG
AGAGCCAAACAGAACATGGAAGACTTGGAAAAGCTACACTCCAAGGAGGTGGATCATATGACTCGTCACC
TGGAGGAGAGTGAGAGGGCCATGCAGGAGAGGGTTCAGAGACTAGAGGCCCTGCGGCTGTCTCTGGAGGA
GGAGCTGAGCCGCATGAAGGCTGCAGTGCTCAGCGAGCGTGGCCAAGCTGAGGAGGAGCTCATCAAAGCC
AGGAACCAGGCCCGCTTGGAGGAGCAACACCGCCTTGCTCATCTGGAGGAAAAGATCCGGCTGTTGGCAC
AGGCAAGGGACGAGGCTCAGGGCACCTGCGTGCAGCAGAAGCAGATGGTAGCCGAGTCCCAGGCACGGGT
CAGCCAGCTGAACCTGCAGATGGAGGGGCAGCAGCGGCGTCTGGAGGAGCTGCAACAGGAGCTGATCAAC
AAAGACCAAGAAAAAGTGGCCGAAGTGGCCAGGGTCAGAGTAGAGCTGCAGGAACAGATGGGCCGTATGC
AGGCTGACCTGGTGGCCCAGGAGGCGCTGAGAGAGAAGGTGGCAGCCCTGGAGCGTCAAATGAAAGTGAT
CGGGAGTGAACACCGGGAGGCGCTGTTGGACAGAGAGAGTGAGAACGCATCTCTCCGAGAGAAGCTGCGG
CTCAAAGAGGCAGAAATCTCCCGTATCCGGGACGAAGAGGCCCAGAGGGCAAGCTTCCTGCAAAACGCTG
TCTTGGCTTACGTGCAGGGGTCCCCTCTGAGAGCCTTGAGTCCCCCTAAATGA

Translation (670 aa):
MEEFRRSYNRLCEESGAEPQEAVLQQLHQLPKGGLDLTTQSLTVETCRALGKLLHKETLLKELVLSDCML
SEEGSTLLFQGLCANTSVQHLDLKGNNLRATGAEALGKLLRQNKSIQSLTLEWNNLGTWEDAFATFCGGL
AANSALRQLDLRNNQISHKGAEELALALKGNTTLQQLDLRWNNIGLLGGRALVNCLPSNRTLWKLDLAGN
NIPGDILRAVEQAMDHNQDRLTAFRENQARTKILSKEVQHLQEEKSKQFLDLMETIDKQREEMARDSRAS
AVRVGQLQEALNERQSIINALKAKLQMTEAALALSEQKVRDLGELLVAGDQERQSLSQRHEKERKLERQE
AADRESKLLRDLSAASEKNLLLRSQVDELERKARSQQEQLFLTKQELTNTSAELKIRAIQAEERLDVEKR
RAKQNMEDLEKLHSKEVDHMTRHLEESERAMQERVQRLEALRLSLEEELSRMKAAVLSERGQAEEELIKA
RNQARLEEQHRLAHLEEKIRLLAQARDEAQGTCVQQKQMVAESQARVSQLNLQMEGQQRRLEELQQELIN
KDQEKVAEVARVRVELQEQMGRMQADLVAQEALREKVAALERQMKVIGSEHREALLDRESENASLREKLR
LKEAEISRIRDEEAQRASFLQNAVLAYVQGSPLRALSPPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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