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Report for CCDS19574.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19574.1 Public Mus musculus 5 4930519G04Rik 23 108 98 CCDS HistoryNCBI Gene:67593Re-query CCDS DB by CCDS ID:19574.1Re-query CCDS DB by GeneID:67593See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19574.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031547.11 ENSMUSP00000031547.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031547.11Link to Ensembl Protein Viewer:ENSMUSP00000031547.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031547Re-query CCDS DB by Protein ID:ENSMUSP00000031547
Original member Current member NCBI NM_026263.2 NP_080539.1 Accepted alive Link to Nucleotide Sequence:NM_026263.2Link to Protein Sequence:NP_080539.1Re-query CCDS DB by Nucleotide ID:NM_026263Re-query CCDS DB by Protein ID:NP_080539Link to BLAST:NP_080539.1

Chromosomal Locations for CCDS 19574.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 114861624 114861644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114863465 114863549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114870155 114870265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114870719 114870810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114872528 114872552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114874280 114874348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114877965 114878018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114879509 114879598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 114882795 114882865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGAGTGTGGAGATTCGGCAGGCCACCCCATCATGGTCACTGTCCTGGTATATCCAGAAGTACATGTCAT
GGATTCTGAGGATTAGGAAAGAGAGAACGGAAGTTGGTTGCTGCATCCCAGATGAAGACGTTCCTCAGAG
GAAGAGACACTTTGTCTATGGGACACGGACCCGTTTGTGGCCACCCAGCAGGGTGGAGTCCACAGATCCC
AATGACGATTCCAACAGGGTCATCATGGAGGTAGTCCCCTGTGTCAGCTCAGAAGAGCAAGAGCAAGAGG
AAGAGGAAGAAGAAGAGTCTGTTGGGAAGGTGGAATCCTTGGACAAAGAGAATGTCATCCTGGAGAGCTC
AGGGGATCCCTTCCATTGTCATAGAAGATCAGAAGAATCCATCGAATACCCGAGTTGGATTGTCCAGAGG
CAGTGGGACTGGAGTAGCGATGAGGAAGATTGTGAGGGCTACTCCATCTCCGTCACCGCCCTAGTGCACG
CTGAAACATGCTGGTCTGACACCCCAGAGGAGGAGGAGAAGGCAGAAGCAGCCGTTAGTTCCCAGGATGA
TGCCAGCAAGGAGGATGAACCTGTAGCCACCAAGATGGCGGAAGCGGCTGCTCTCTGA

Translation (205 aa):
MSVEIRQATPSWSLSWYIQKYMSWILRIRKERTEVGCCIPDEDVPQRKRHFVYGTRTRLWPPSRVESTDP
NDDSNRVIMEVVPCVSSEEQEQEEEEEEESVGKVESLDKENVILESSGDPFHCHRRSEESIEYPSWIVQR
QWDWSSDEEDCEGYSISVTALVHAETCWSDTPEEEEKAEAAVSSQDDASKEDEPVATKMAEAAAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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