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Report for CCDS9264.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9264.1 Public Homo sapiens 12 SLC15A4 24 110 108 CCDS HistoryNCBI Gene:121260Re-query CCDS DB by CCDS ID:9264.1Re-query CCDS DB by GeneID:121260See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9264.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266771.10 ENSP00000266771.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266771.10Link to Ensembl Protein Viewer:ENSP00000266771.5Re-query CCDS DB by Nucleotide ID:ENST00000266771Re-query CCDS DB by Protein ID:ENSP00000266771
Original member Current member NCBI NM_145648.4 NP_663623.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145648.4Link to Protein Sequence:NP_663623.1Re-query CCDS DB by Nucleotide ID:NM_145648Re-query CCDS DB by Protein ID:NP_663623Link to BLAST:NP_663623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663623.1 577 Q8N697-1 577 100% 0 0

Chromosomal Locations for CCDS 9264.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 128794196 128794356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128799259 128799417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128800854 128801009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128808788 128808956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128809396 128809473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128809943 128810111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128814775 128815070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 128823398 128823943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGGAGGGCTCTGGGGGCGGTGCGGGCGAGCGGGCGCCGCTGCTGGGCGCGCGGCGGGCGGCGGCGGCCG
CGGCGGCGGCTGGGGCGTTCGCGGGCCGGCGCGCGGCGTGCGGGGCCGTGCTGCTGACGGAGCTGCTGGA
GCGCGCCGCTTTCTACGGCATCACGTCCAACCTGGTGCTATTCCTGAACGGGGCGCCGTTCTGCTGGGAG
GGCGCGCAGGCCAGCGAGGCGCTGCTGCTCTTCATGGGCCTCACCTACCTGGGCTCGCCGTTCGGAGGCT
GGCTGGCCGACGCGCGGCTGGGCCGGGCGCGCGCCATCCTGCTGAGCCTGGCGCTCTACCTGCTGGGCAT
GCTGGCCTTCCCGCTGCTGGCCGCGCCCGCCACGCGAGCCGCGCTCTGCGGTTCCGCGCGCCTGCTCAAC
TGCACGGCGCCTGGTCCCGACGCCGCCGCCCGCTGCTGCTCACCGGCCACCTTCGCGGGGCTGGTGCTGG
TGGGCCTGGGCGTGGCCACCGTCAAGGCCAACATCACGCCCTTCGGCGCCGACCAGGTTAAAGATCGAGG
TCCGGAAGCCACTAGGAGATTTTTTAATTGGTTTTATTGGAGCATTAACCTGGGAGCGATCCTGTCGTTA
GGTGGCATTGCCTATATTCAGCAGAACGTCAGCTTTGTCACTGGTTATGCGATCCCCACTGTCTGCGTCG
GCCTTGCTTTTGTGGTCTTCCTCTGTGGCCAGAGCGTTTTCATCACCAAGCCTCCTGATGGCAGTGCCTT
CACCGACATGTTCAAGATACTGACGTATTCCTGCTGTTCCCAGAAGCGAAGTGGAGAGCGCCAGAGTAAT
GGTGAAGGCATTGGAGTCTTTCAGCAATCTTCTAAACAAAGTCTGTTTGATTCATGTAAGATGTCTCATG
GTGGGCCATTTACAGAAGAGAAAGTGGAAGATGTGAAAGCTCTGGTCAAGATTGTCCCTGTTTTCTTGGC
TTTGATACCTTACTGGACAGTGTATTTCCAAATGCAGACAACATATGTTTTACAGAGTCTTCATTTGAGG
ATTCCAGAAATTTCAAATATTACAACCACTCCTCACACGCTCCCTGCAGCCTGGCTGACCATGTTTGATG
CTGTGCTCATCCTCCTGCTCATCCCTCTGAAGGACAAACTGGTCGATCCCATTTTGAGAAGACATGGCCT
GCTCCCATCCTCCCTGAAGAGGATCGCCGTGGGCATGTTCTTTGTCATGTGCTCGGCCTTTGCTGCAGGA
ATTTTGGAGAGTAAAAGGCTGAACCTTGTTAAAGAGAAAACCATTAATCAGACCATCGGCAACGTCGTCT
ACCATGCTGCCGATCTGTCGCTGTGGTGGCAGGTGCCGCAGTACTTGCTGATTGGGATCAGCGAGATCTT
TGCAAGTATCGCAGGCCTGGAATTTGCATACTCAGCTGCCCCCAAGTCCATGCAGAGTGCCATAATGGGC
TTGTTCTTTTTCTTCTCTGGCGTCGGGTCGTTCGTGGGTTCTGGACTGCTGGCACTGGTGTCTATCAAAG
CCATCGGATGGATGAGCAGTCACACAGACTTTGGTAATATTAACGGCTGCTATTTGAACTATTACTTTTT
TCTTCTGGCTGCTATTCAAGGAGCTACCCTCCTGCTTTTCCTCATTATTTCTGTGAAATATGACCATCAT
CGAGACCATCAGCGATCAAGAGCCAATGGCGTGCCCACCAGCAGGAGGGCCTGA

Translation (577 aa):
MEGSGGGAGERAPLLGARRAAAAAAAAGAFAGRRAACGAVLLTELLERAAFYGITSNLVLFLNGAPFCWE
GAQASEALLLFMGLTYLGSPFGGWLADARLGRARAILLSLALYLLGMLAFPLLAAPATRAALCGSARLLN
CTAPGPDAAARCCSPATFAGLVLVGLGVATVKANITPFGADQVKDRGPEATRRFFNWFYWSINLGAILSL
GGIAYIQQNVSFVTGYAIPTVCVGLAFVVFLCGQSVFITKPPDGSAFTDMFKILTYSCCSQKRSGERQSN
GEGIGVFQQSSKQSLFDSCKMSHGGPFTEEKVEDVKALVKIVPVFLALIPYWTVYFQMQTTYVLQSLHLR
IPEISNITTTPHTLPAAWLTMFDAVLILLLIPLKDKLVDPILRRHGLLPSSLKRIAVGMFFVMCSAFAAG
ILESKRLNLVKEKTINQTIGNVVYHAADLSLWWQVPQYLLIGISEIFASIAGLEFAYSAAPKSMQSAIMG
LFFFFSGVGSFVGSGLLALVSIKAIGWMSSHTDFGNINGCYLNYYFFLLAAIQGATLLLFLIISVKYDHH
RDHQRSRANGVPTSRRA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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