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Report for CCDS26325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26325.1 Public Mus musculus 13 Vmn1r210 23 108 98 CCDS HistoryNCBI Gene:171269Re-query CCDS DB by CCDS ID:26325.1Re-query CCDS DB by GeneID:171269See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26325.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072044.1 ENSMUSP00000071925.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072044.1Link to Ensembl Protein Viewer:ENSMUSP00000071925.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000072044Re-query CCDS DB by Protein ID:ENSMUSP00000071925
Original member Current member EBI ENSMUST00000226294.1 ENSMUSP00000153776.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226294.1Link to Ensembl Protein Viewer:ENSMUSP00000153776.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226294Re-query CCDS DB by Protein ID:ENSMUSP00000153776
Original member Current member EBI ENSMUST00000226180.1 ENSMUSP00000154333.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226180.1Link to Ensembl Protein Viewer:ENSMUSP00000154333.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226180Re-query CCDS DB by Protein ID:ENSMUSP00000154333
Original member Current member NCBI NM_134235.1 NP_598996.1 Accepted alive Link to Nucleotide Sequence:NM_134235.1Link to Protein Sequence:NP_598996.1Re-query CCDS DB by Nucleotide ID:NM_134235Re-query CCDS DB by Protein ID:NP_598996Link to BLAST:NP_598996.1

Chromosomal Locations for CCDS 26325.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 22827194 22828114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGTTTTTGAATTATATTAATAAAATAATTTCTCTCTTTATGACTGTGTTTGGCACTCTGGGGAACATGT
CTGTTTCTGTGAATTATATGTTCAGTTGGTGGGGAAGCCCTGAGAAGAAACCCATACACCTTATTCTCAT
CCACATGGCTTTTACAAACATCCTAATACTTCTTGCAAAAGGACTGCCAAAGACTATTTTAGCTTTTGGC
TTGAGAAACTTCCTAGATGACATAGGGTGTAAGATCATTGTTTACCTAGAAAGGGTGGCACGGGGCCTCT
CCATCTGCACCAGCAGTCTCCTCACTGTGGTACAGGCCATCATTATCAGTCCTAGAGGATCTGGATGGAG
GAAGCTCAAGCCAAAGTCTGCATGGCACATCCTTCCATTCTTCTCATTCTTTTGGATACTCAATGCTTTA
ATCAGTACAAACCTAATTCATTCCATTAAAAGTGCAAGTATAAATATATCACAACGTATAAATGATGACA
ATTATTGCTATTTCATGCTAGAAAATGAGAAAATAAAATGGGTTGTTCTCCCTCTCATGGTCCTGAGAGA
TGCAGTTTTTCAGGGTGCTATGGGAGGGGCCAGTGGCTACATGGTATTTCTTCTCCACAAGCACCACCAG
CAAGTCCTCTACCTTCTCAACTCCAAACTTCTCTACAGAACTCCCCCTGAGCTGAGAGCTGCTCAAAGTG
TCCTCCTTCTGATGCTCTGCTTTGTTTTCTTCTACTGGGCAGATTGTGCCTTTTCCCTAATTATAAGCAT
CTCTTCAAGGGACAATAACCTGATGCTAAATACTCGAGAATTTCTGGCCCTTGGTTATGCAACTTTTAGC
CCCTTTGTGCTGATTCACAGGGATGGGCTTCTGGTTAAATTTTGGCATGCTCAGTGGGAGAAATTGAGAA
AATGTCTCTGA

Translation (306 aa):
MFLNYINKIISLFMTVFGTLGNMSVSVNYMFSWWGSPEKKPIHLILIHMAFTNILILLAKGLPKTILAFG
LRNFLDDIGCKIIVYLERVARGLSICTSSLLTVVQAIIISPRGSGWRKLKPKSAWHILPFFSFFWILNAL
ISTNLIHSIKSASINISQRINDDNYCYFMLENEKIKWVVLPLMVLRDAVFQGAMGGASGYMVFLLHKHHQ
QVLYLLNSKLLYRTPPELRAAQSVLLLMLCFVFFYWADCAFSLIISISSRDNNLMLNTREFLALGYATFS
PFVLIHRDGLLVKFWHAQWEKLRKCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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