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Report for CCDS21005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21005.1 Public Mus musculus 7 Vmn1r185 23 108 98 CCDS HistoryNCBI Gene:171265Re-query CCDS DB by CCDS ID:21005.1Re-query CCDS DB by GeneID:171265See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21005.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000171039.1 ENSMUSP00000128295.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171039.1Link to Ensembl Protein Viewer:ENSMUSP00000128295.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171039Re-query CCDS DB by Protein ID:ENSMUSP00000128295
Original member Current member EBI ENSMUST00000228633.1 ENSMUSP00000153777.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228633.1Link to Ensembl Protein Viewer:ENSMUSP00000153777.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228633Re-query CCDS DB by Protein ID:ENSMUSP00000153777
Original member Current member EBI ENSMUST00000228004.1 ENSMUSP00000154013.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228004.1Link to Ensembl Protein Viewer:ENSMUSP00000154013.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228004Re-query CCDS DB by Protein ID:ENSMUSP00000154013
Original member Current member EBI ENSMUST00000227695.1 ENSMUSP00000154057.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227695.1Link to Ensembl Protein Viewer:ENSMUSP00000154057.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227695Re-query CCDS DB by Protein ID:ENSMUSP00000154057
Original member Current member EBI ENSMUST00000227264.1 ENSMUSP00000154202.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227264.1Link to Ensembl Protein Viewer:ENSMUSP00000154202.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227264Re-query CCDS DB by Protein ID:ENSMUSP00000154202
Original member Current member EBI ENSMUST00000228133.1 ENSMUSP00000154251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228133.1Link to Ensembl Protein Viewer:ENSMUSP00000154251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228133Re-query CCDS DB by Protein ID:ENSMUSP00000154251
Original member Current member EBI ENSMUST00000227411.1 ENSMUSP00000154307.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227411.1Link to Ensembl Protein Viewer:ENSMUSP00000154307.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227411Re-query CCDS DB by Protein ID:ENSMUSP00000154307
Original member Current member EBI ENSMUST00000228467.1 ENSMUSP00000154357.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228467.1Link to Ensembl Protein Viewer:ENSMUSP00000154357.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228467Re-query CCDS DB by Protein ID:ENSMUSP00000154357
Original member Current member EBI ENSMUST00000227479.1 ENSMUSP00000154388.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227479.1Link to Ensembl Protein Viewer:ENSMUSP00000154388.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227479Re-query CCDS DB by Protein ID:ENSMUSP00000154388
Original member Current member EBI ENSMUST00000226694.1 ENSMUSP00000154516.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226694.1Link to Ensembl Protein Viewer:ENSMUSP00000154516.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226694Re-query CCDS DB by Protein ID:ENSMUSP00000154516
Original member Current member EBI ENSMUST00000227461.1 ENSMUSP00000154568.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000227461.1Link to Ensembl Protein Viewer:ENSMUSP00000154568.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000227461Re-query CCDS DB by Protein ID:ENSMUSP00000154568
Original member Current member EBI ENSMUST00000228676.1 ENSMUSP00000154688.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228676.1Link to Ensembl Protein Viewer:ENSMUSP00000154688.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228676Re-query CCDS DB by Protein ID:ENSMUSP00000154688
Original member Current member EBI ENSMUST00000228367.1 ENSMUSP00000154816.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228367.1Link to Ensembl Protein Viewer:ENSMUSP00000154816.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228367Re-query CCDS DB by Protein ID:ENSMUSP00000154816
Original member Current member NCBI NM_134231.1 NP_598992.1 Accepted alive Link to Nucleotide Sequence:NM_134231.1Link to Protein Sequence:NP_598992.1Re-query CCDS DB by Nucleotide ID:NM_134231Re-query CCDS DB by Protein ID:NP_598992Link to BLAST:NP_598992.1

Chromosomal Locations for CCDS 21005.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 26611119 26612078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (960 nt):
ATGATGAAGCACAGAATAGACTTCTGGAATCTGGCTACCAGAATCATTTTATTATCCCAAACTACAGTTG
GAATTCTGGTAAATTTCTCTCTTATGTTCCACTATCTAGTCCTTTACTACAGAGAATGCAGATTAAAGCC
TACAGATTTCATTCTATTGCACCTACTGGCAGCCAATTCCTTGTTCATTCTTTCTTCAGGAGTGCCCCAC
ATAATAGCATTTTGGGGACTGAAGCAGTTCTTGAATGATATTGTATGTGAGTTCCTATTCTATATTCAAG
GATTTGGGAGAAGTGTGTCCATTTGGACCACTTGCCTCTTGAGTGTTTTTCAGGCCATGACCATCAGCCC
CAGAAAATCCTGTTGGAAGGATCATAAAGTCAAAGCTATAATGCACAATGGCTGTTCCATTTCCCTCATG
TGGGTCTTGCACATGCTAATGCATTTTATTATCTTTGTGTACCCATTTATAAAAATGAATAGTAAAAATG
TGACAAAACTACAAGATTTTGGATACTGCTCAGTAGTAAAGAAACAAAATATCACTGAATTTCTCTATGC
AGCATTGGTGATGTTCCCTGAATTCTTCTTTTCTGTGCTCATTGCCTGGTCCAGTGGCTCCATGATAGTC
ATTCTATTCAAACACAAGAAGAAGGTTCAACATATCCATAGCACACATGTTTCTAGAAGAAACTCCCCTG
AATCCAGAGCCACCCAGAACATTCTGGCTCTGGTGTCCACATTTCTGGCCTTTTATACTCTGTCCTCCAT
TTTAAGAGGGTGCATTGCTCTTTTGTACAATTACAATTGGTGGCTGATGAACATAAATCACATCACTTCT
CTGTGTTTTCCGTCTTTTGGGCCATGTGTTTTCATGAGAAGTTACTCCCTCATGTCTAGATTCAACTTGG
CCCATTTAAGAAAAATAAACCTATCTCCTAACTTAGTTATAAATATGTAA

Translation (319 aa):
MMKHRIDFWNLATRIILLSQTTVGILVNFSLMFHYLVLYYRECRLKPTDFILLHLLAANSLFILSSGVPH
IIAFWGLKQFLNDIVCEFLFYIQGFGRSVSIWTTCLLSVFQAMTISPRKSCWKDHKVKAIMHNGCSISLM
WVLHMLMHFIIFVYPFIKMNSKNVTKLQDFGYCSVVKKQNITEFLYAALVMFPEFFFSVLIAWSSGSMIV
ILFKHKKKVQHIHSTHVSRRNSPESRATQNILALVSTFLAFYTLSSILRGCIALLYNYNWWLMNINHITS
LCFPSFGPCVFMRSYSLMSRFNLAHLRKINLSPNLVINM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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