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Report for CCDS20807.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20807.1 Public Mus musculus 7 Vmn1r83 23 108 98 CCDS HistoryNCBI Gene:171243Re-query CCDS DB by CCDS ID:20807.1Re-query CCDS DB by GeneID:171243See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20807.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086229.2 ENSMUSP00000083406.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086229.2Link to Ensembl Protein Viewer:ENSMUSP00000083406.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000086229Re-query CCDS DB by Protein ID:ENSMUSP00000083406
Original member Current member EBI ENSMUST00000226701.1 ENSMUSP00000154521.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000226701.1Link to Ensembl Protein Viewer:ENSMUSP00000154521.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000226701Re-query CCDS DB by Protein ID:ENSMUSP00000154521
Original member Current member NCBI NM_134209.1 NP_598970.1 Accepted alive Link to Nucleotide Sequence:NM_134209.1Link to Protein Sequence:NP_598970.1Re-query CCDS DB by Nucleotide ID:NM_134209Re-query CCDS DB by Protein ID:NP_598970Link to BLAST:NP_598970.1

Chromosomal Locations for CCDS 20807.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12321208 12322128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGAAAATGACATCTTCAAACTTGGTAGTGGGAATATTACTCTTCTCCCAGATTGTCATGGGAATGCTTG
GCAATTCCTCAATACTATTTTATTATGTCATTTTAATATTCACTGGGAAACATTTAACACCGAAAGACCT
GATTATAGAGCACTTGACATTTGCCAACTGCTTGTCTATTATCTCAAAAGGCATTCCACAGACACTGTCA
GATTTGGGATTTAAAAATTTCCTAGATGATATTGGATGTAAACTGATAATGTATATTTACCGAATAGTGA
GGGGGATGTCTCTGTATGCCATGTGCCTATTGAGTTGCTTCCAAGCAATCACAATCAGCTCCGGGAACTC
CAGGCTGATGATACTTAAACACAGAGCCGTGAAGTACGTTGGTCCCTCCTGCTTAGTCAGTTGGCTTGTG
CACCTGCTTCTAAACATTATGACGCCAGTAAAAGTGATAGGCCCCATTTCTAGCAAAAATGTGACGAACG
TGATGAGTTATGGGTACTGCTCATGGTTCACTTCCAGCAATGTTGCAACTGCACTGTATATGTTCTTACT
GTGCTTCTGTGATGGCCTGTGTCTAAGTCTAATGACATGTTCAAGTGTTTCCATGGTGAATATCCTTTAC
AAACACAAGAGACAAGTCAAACATATCCACAGTGCTCAACAACTTTTGAAAGTCTTGCCTGAGGACAAAG
CCACCCAAATTATTCTCACCCTGGTGTGCACATTTGTCATCTCTTACTCAATATCTTCTATTCGTGTAAT
CTTTACAACCTACTCTGAGGGATCAGTGCTTTGGGGAGTAAGTGTATTTATATTTCTAGAAATATGCTTC
CCCATATTTTGCCCCTTTGTTCTCATCAGCAATATCAAGTGTAGTTTCAAACTGTTTTTACCCTGCTGTG
GTAAGAGATAG

Translation (306 aa):
MKMTSSNLVVGILLFSQIVMGMLGNSSILFYYVILIFTGKHLTPKDLIIEHLTFANCLSIISKGIPQTLS
DLGFKNFLDDIGCKLIMYIYRIVRGMSLYAMCLLSCFQAITISSGNSRLMILKHRAVKYVGPSCLVSWLV
HLLLNIMTPVKVIGPISSKNVTNVMSYGYCSWFTSSNVATALYMFLLCFCDGLCLSLMTCSSVSMVNILY
KHKRQVKHIHSAQQLLKVLPEDKATQIILTLVCTFVISYSISSIRVIFTTYSEGSVLWGVSVFIFLEICF
PIFCPFVLISNIKCSFKLFLPCCGKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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