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Report for CCDS25256.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25256.1 Public Mus musculus 11 Spata20 23 108 98 CCDS HistoryNCBI Gene:217116Re-query CCDS DB by CCDS ID:25256.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25256.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041705.7 ENSMUSP00000042572.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041705.7Link to Ensembl Protein Viewer:ENSMUSP00000042572.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041705Re-query CCDS DB by Protein ID:ENSMUSP00000042572
Original member Current member NCBI NM_144827.4 NP_659076.2 Accepted alive Link to Nucleotide Sequence:NM_144827.4Link to Protein Sequence:NP_659076.2Re-query CCDS DB by Nucleotide ID:NM_144827Re-query CCDS DB by Protein ID:NP_659076Link to BLAST:NP_659076.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659076.2 790 Q80YT5 790 100% 0 0

Chromosomal Locations for CCDS 25256.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 94479096 94479266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94479439 94479519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94480416 94480615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94481623 94481834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94482090 94482258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94482504 94482696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94482779 94482988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94483086 94483160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94483381 94483485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94483583 94483713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94483949 94484150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94484268 94484411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94484487 94484641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94484754 94484818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94484917 94485099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 94485210 94485286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2373 nt):
ATGAGCCACCATTCCTCACCACCCCCAAAACATAAGGGGGAGCACAAAGGCCACGGTCTCCCCCGTGGTT
CAGAAAGGGGCAGCTCTTCCCGGGACAAGGACCGAAGTGCTACTACAGTTAGTAGTTCAGCGCCCATGCC
TGCTGGAGGAAAGTCAAGCCGGACTAACTGTCCTCCACCTGCACCGCCGAAGACCGTCAATCGCCTGATC
AATGAGAAGTCTCCATACCTCTTACAGCATGCCTACAACCCGGTGGATTGGTACCCCTGGGGACAGGAAG
CCTTCGACAAGGCCAAAAAAGAAAACAAGCCGATTTTTCTCTCAGTGGGGTACTCTACCTGTCACTGGTG
CCACATGATGGAGGAGGAATCCTTCCAGAATGAAGAGATAGGGCGCCTGCTCAATGAGAACTTCATCTGT
GTCATGGTGGACCGAGAGGAGCGGCCAGATGTGGACAAAGTATACATGACTTTTGTGCAGGCCACCAGTA
GTGGAGGAGGCTGGCCAATGAATGTGTGGCTGACCCCCGGCCTCCAGCCATTCGTTGGGGGCACCTACTT
CCCGCCAGAGGATGGTTTGACTCGAGTTGGCTTCCGAACAGTGTTGATGAGAATCTGTGATCAGTGGAAA
CTGAACAAGAACACCCTTCTGGAGAACAGCCAGCGCGTCACCACAGCCCTTCTGGCCCGATCTGAGATCA
GCGTGGGTGACAGACAGATTCCAGCCTCTGCTGCCACCATGAACAGCCGTTGCTTCCAGCAGCTGGATGA
GGGCTATGATGAGGAATACGGCGGCTTCGCCGAGGCCCCCAAGTTTCCCACACCTGTGATCCTGAACTTC
CTGTTCTCCTATTGGCTCAGTCACCGGCTCACCCAGGATGGCTCCCGAGCTCAGCAGATGGCGTTGCACA
CCCTGAAGATGATGGCCAACGGAGGCATCCAGGATCATGTGGGGCAGGGCTTTCACCGCTACTCCACGGA
CCGACAGTGGCACATCCCTCACTTTGAGAAAATGCTGTATGACCAGGCCCAACTCTCGGTGGTCTATACC
CAGGCCTTCCAGATCTCTGGCGATGAATTCTACGCTGATGTTGCTAAAGGCATCCTGCAGTATGTGACCC
GGACTCTGAGCCATCGGTCTGGAGGCTTTTACAGTGCAGAGGATGCTGACTCCCCCCCGGAGAGAGGCAT
GAAGCCCCAAGAGGGTGCTTACTATGTGTGGACAGTCAAAGAGGTCCAACAGCTACTCCCAGAGCCCGTG
GTAGGCGCCAGCGAGCCGCTGACCTCAGGCCAGCTCCTAATGAAGCACTATGGACTCAGTGAAGTAGGCA
ATATCAACTCCTCTCAGGATCCCAACGGGGAACTGCACGGCCAGAATGTCCTGATGGTGCGTTACTCACT
AGAGCTGACTGCAGCCCGCTATGGCCTGGAGGTGGAGGCTGTGAGGGCCTTGCTCAACACAGGGCTGGAG
AAGCTCTTCCAGGCCCGGAAACATCGGCCGAAAGCACACCTAGACAACAAGATGCTCGCTGCCTGGAACG
GCTTGATGGTTTCTGGCTTTGCTGTGACGGGGGCTGCCCTGGGTATGGAAAAGTTAGTTGCCCAGGCCAC
CAGCGGTGCCAAATTCCTTAAGCGGCACATGTTTGATGTGTCCAGCGGCCGCCTGAAGAGGACATGCTAT
GCTGGCACCGGAGGAACTGTGGAGCAAAGCAACCCACCATGCTGGGGTTTCCTGGAGGACTATGCCTTTG
TGGTACGGGGCCTCCTGGACCTGTACGAGGCCTCACAGGAGAGCTCATGGCTTGAGTGGGCTCTGCGCCT
GCAGGACACACAGGACAAGCTCTTCTGGGACCCCCGAGGTGGTGGCTACTTCTGCAGTGAGGCTGAGCTG
GGGGCAGACCTGCCTCTTCGTCTGAAGGATGACCAGGATGGCGCAGAGCCCAGTGCTAACTCTGTGTCGG
CCCACAACCTCCTTCGGTTGCACAGCTTCACTGGCCACAAGGATTGGATGGACAAGTGTGTGTGCCTGCT
GACAGCCTTCTCTGAGCGCATGCGCCGCGTCCCAGTGGCCTTGCCTGAGATGGTCCGTACCCTCTCAGCT
CAACAGCAGACTCTGAAGCAGATTGTGATCTGTGGAGACCCCCAGGCCAAGGACACCAAGGCCCTGCTGC
AATGTGTCCACTCCATCTACGTCCCTAACAAGGTGCTCATTCTGGCTGATGGAGACCCATCGAGCTTCCT
GTCCCGTCAGCTTCCCTTCTTGAGCAGCCTTCGAAGAGTAGAAGACCGGGCCACAGTCTACATATTTGAG
AACCAAGCCTGCTCCATGCCTATCACGGATCCCTGTGAGTTACGAAAGCTGCTACACCAATGA

Translation (790 aa):
MSHHSSPPPKHKGEHKGHGLPRGSERGSSSRDKDRSATTVSSSAPMPAGGKSSRTNCPPPAPPKTVNRLI
NEKSPYLLQHAYNPVDWYPWGQEAFDKAKKENKPIFLSVGYSTCHWCHMMEEESFQNEEIGRLLNENFIC
VMVDREERPDVDKVYMTFVQATSSGGGWPMNVWLTPGLQPFVGGTYFPPEDGLTRVGFRTVLMRICDQWK
LNKNTLLENSQRVTTALLARSEISVGDRQIPASAATMNSRCFQQLDEGYDEEYGGFAEAPKFPTPVILNF
LFSYWLSHRLTQDGSRAQQMALHTLKMMANGGIQDHVGQGFHRYSTDRQWHIPHFEKMLYDQAQLSVVYT
QAFQISGDEFYADVAKGILQYVTRTLSHRSGGFYSAEDADSPPERGMKPQEGAYYVWTVKEVQQLLPEPV
VGASEPLTSGQLLMKHYGLSEVGNINSSQDPNGELHGQNVLMVRYSLELTAARYGLEVEAVRALLNTGLE
KLFQARKHRPKAHLDNKMLAAWNGLMVSGFAVTGAALGMEKLVAQATSGAKFLKRHMFDVSSGRLKRTCY
AGTGGTVEQSNPPCWGFLEDYAFVVRGLLDLYEASQESSWLEWALRLQDTQDKLFWDPRGGGYFCSEAEL
GADLPLRLKDDQDGAEPSANSVSAHNLLRLHSFTGHKDWMDKCVCLLTAFSERMRRVPVALPEMVRTLSA
QQQTLKQIVICGDPQAKDTKALLQCVHSIYVPNKVLILADGDPSSFLSRQLPFLSSLRRVEDRATVYIFE
NQACSMPITDPCELRKLLHQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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