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Report for CCDS46540.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46540.1 Public Homo sapiens 2 B3GNT7 24 110 108 CCDS HistoryNCBI Gene:93010Re-query CCDS DB by CCDS ID:46540.1Re-query CCDS DB by GeneID:93010See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46540.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000287590.6 ENSP00000287590.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000287590.6Link to Ensembl Protein Viewer:ENSP00000287590.5Re-query CCDS DB by Nucleotide ID:ENST00000287590Re-query CCDS DB by Protein ID:ENSP00000287590
Original member Current member NCBI NM_145236.3 NP_660279.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145236.3Link to Protein Sequence:NP_660279.1Re-query CCDS DB by Nucleotide ID:NM_145236Re-query CCDS DB by Protein ID:NP_660279Link to BLAST:NP_660279.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660279.1 401 Q8NFL0 401 100% 0 0

Chromosomal Locations for CCDS 46540.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 231395804 231395814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 231397731 231398925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1206 nt):
ATGTCGCTGTGGAAGAAAACCGTCTACCGGAGTCTGTGCCTGGCCCTGGCCCTGCTCGTGGCCGTGACGG
TGTTCCAACGCAGTCTCACCCCTGGTCAGTTTCTGCAGGAGCCTCCGCCACCCACCCTGGAGCCACAGAA
GGCCCAGAAGCCAAATGGACAGCTGGTGAACCCCAACAACTTCTGGAAGAACCCGAAAGATGTGGCTGCG
CCCACGCCCATGGCCTCTCAGGGGCCCCAGGCCTGGGACGTGACCACCACTAACTGCTCAGCCAATATCA
ACTTGACCCACCAGCCCTGGTTCCAGGTCCTGGAGCCGCAGTTCCGGCAGTTTCTCTTCTACCGCCACTG
CCGCTACTTCCCCATGCTGCTGAACCACCCGGAGAAGTGCAGGGGCGATGTCTACCTGCTGGTGGTTGTC
AAGTCGGTCATCACGCAGCACGACCGCCGCGAGGCCATCCGCCAGACCTGGGGCCGCGAGCGGCAGTCCG
CGGGTGGGGGCCGAGGCGCCGTGCGCACCCTCTTCCTGCTGGGCACGGCCTCCAAGCAGGAGGAGCGCAC
GCACTACCAGCAGCTGCTGGCCTACGAAGACCGCCTCTACGGCGACATCCTGCAGTGGGGCTTTCTCGAC
ACCTTCTTCAACCTGACCCTCAAGGAGATCCACTTCCTCAAGTGGCTGGACATCTACTGCCCCCACGTCC
CCTTCATTTTCAAAGGCGACGATGACGTCTTCGTCAACCCCACCAACCTGCTAGAATTTCTGGCTGACCG
GCAGCCACAGGAAAACCTGTTCGTGGGCGATGTCCTGCAGCACGCTCGGCCCATTCGCAGGAAAGACAAC
AAATACTACATCCCGGGGGCCCTGTACGGCAAGGCCAGCTATCCGCCGTATGCAGGCGGCGGTGGCTTCC
TCATGGCCGGCAGCCTGGCCCGGCGCCTGCACCATGCCTGCGACACCCTGGAGCTCTACCCGATCGACGA
CGTCTTTCTGGGCATGTGCCTGGAGGTGCTGGGCGTGCAGCCCACGGCCCACGAGGGCTTCAAGACTTTC
GGCATCTCCCGGAACCGCAACAGCCGCATGAACAAGGAGCCGTGCTTTTTCCGCGCCATGCTCGTGGTGC
ACAAGCTGCTGCCCCCTGAGCTGCTCGCCATGTGGGGGCTGGTGCACAGCAATCTCACCTGCTCCCGCAA
GCTCCAGGTGCTCTGA

Translation (401 aa):
MSLWKKTVYRSLCLALALLVAVTVFQRSLTPGQFLQEPPPPTLEPQKAQKPNGQLVNPNNFWKNPKDVAA
PTPMASQGPQAWDVTTTNCSANINLTHQPWFQVLEPQFRQFLFYRHCRYFPMLLNHPEKCRGDVYLLVVV
KSVITQHDRREAIRQTWGRERQSAGGGRGAVRTLFLLGTASKQEERTHYQQLLAYEDRLYGDILQWGFLD
TFFNLTLKEIHFLKWLDIYCPHVPFIFKGDDDVFVNPTNLLEFLADRQPQENLFVGDVLQHARPIRRKDN
KYYIPGALYGKASYPPYAGGGGFLMAGSLARRLHHACDTLELYPIDDVFLGMCLEVLGVQPTAHEGFKTF
GISRNRNSRMNKEPCFFRAMLVVHKLLPPELLAMWGLVHSNLTCSRKLQVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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