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Report for CCDS78924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78924.1 Public Mus musculus 11 Fem1al 23 108 98 CCDS HistoryNCBI Gene:216622Re-query CCDS DB by CCDS ID:78924.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 78924.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000104962.1 ENSMUSP00000100568.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000104962.1Link to Ensembl Protein Viewer:ENSMUSP00000100568.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000104962Re-query CCDS DB by Protein ID:ENSMUSP00000100568
Original member Current member NCBI NM_176829.2 NP_789799.1 Accepted alive Link to Nucleotide Sequence:NM_176829.2Link to Protein Sequence:NP_789799.1Re-query CCDS DB by Nucleotide ID:NM_176829Re-query CCDS DB by Protein ID:NP_789799Link to BLAST:NP_789799.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_789799.1 654 Q8C0T1 654 100% 0 0

Chromosomal Locations for CCDS 78924.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 29823491 29825455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGGATCTGCACACAGCGGTGTACAATGCGGCGCACGACGGCAAGCTGCCTCTGCTGCAGAAACTGTTGG
CCAGCCGTGGGCGTGAGGAGCTGGAGGAGCTGCTGGGTGAGGTGGCCGGCGGTGGAACGCCACTGCTAAT
CGCAGCGCGCCGTGGACACCTAGACGTGGTGGAGTATCTGGTGGACCACTGCGGCGCCAGCGTGGAGGCG
AGTGGCTCTGTGCACTTCGATGGCGAGACCATCGAGGGCGCGCCGCCGCTCTGGGCAGCGTCGGCCGCGG
GTCACCTGGCCGTGGTGCGTAGCCTTCTGCACCGAGGCGCCTCGGTCAACCGCACCACGTGCACCAACTC
CACACCGCTGCGCGCCGCCTGCTTCAACGGCCACCTGGACGTGGTGCGCTGCCTGGTGGGCGAGCACAAG
GCGGACCTGGAGGTGGCCAATCGCCACGGCCACACGTGCCTTATGATCTCCTGCTACAAGGGCCACCGCG
AGATCGCACGCTACCTGCTGGAGCGCGGCGCACAGGTGAACCGGCGCAGCGCCAAGGGCAACACCGCCCT
GCACGACTGTGCAGAATCTGGCAGCCTGGAGATCCTACAACTGCTGCTGAGCTGCCACGCGCGCATGGAG
CGCGACGGCTATGGCATGACGCCGCTGCTGGCCGCCAGCATCACTGGGCACACCAACATCGTGGAGTACC
TCATCCAGGAACAGCCGAGCCACGAGCAGCTCTCAGGGACAGAGCTTCCTGGAGAAGGCTCCTCCCAGAT
GGCAGGAAACCACTGCTCCACCCCAGAAGATGCAGAACAGTATGAGAGCTGCTGCCCTACCAGCCGGGAA
GCGGCTGTGGAAGCTTTGGAGCTGCTGGGTGCCACCTATGTGGATAAGAAAAGGGATCTGCTTGGAGCCC
TGAAGCACTGGAGAAGGGCGATGGAACTCCGCCACCAGGGTGGAGGCTTCCTCCCTAAGCCAGAGCCCCA
GCAACTGGTTCTGGCCTATGACTATTCCAGGGAGGTGACTACGCCTCAAGAGTTGGAAGCCCTCATTACA
GATCCTGATGAGATGCGGATGCAGGCGCTGCTGATACGGGAGAGAATCTTGGGCCCCTCACATCCTGACA
CTTCATACTACATACGGTACCGGGGTGCTGTCTATGCGGACTCCGGGAATTTCGAGCGCTGTATCCGTCT
GTGGAAGTATGCCTTGGACATGCAACAAAACAACCTGGAGCCCCTGAGCCCCATGACCGCCAGCAGCTTC
CTGTCGTTTGCAGAGCTCTTCTCCTACGTGCTGCAGGACCACTCGGCCAAGGGCAACCTAGGCATGCAGC
TTGACTTTGCCGACCTCATAGGTGTGCTCAGCAAAGGGGTTCGGGAAGTGGAACGGGCTCTGCAGCTGCC
CAAGGAACCGGATGACTCCGCACAGTTCACCAAAGCCATTGCCATCATCCTCCACCTTCTGTACCTATTG
GAGAAGGTGGAGTGCACCCCCAGGCAGGAACACCTCAAGCACCAGACAGTCTATCGCCTGCTCAAGTGTG
CCCCTCGTGGCAAGAACGGCTTCACCCCACTACACATGGCGGTGGACAAGGAGACCACCAACGTGGGCCA
GTATCATGTGGGCGTCTTCCCGTCACTGCAGGTGGTCAAGGTGCTGTTGGACTGCGGAGCAGACCCTGAC
AGCAGGGATTTCGACAACAACAGCCCACTGCACATCGCTGCCCAGAACAATTGCCCGGCCATCATGGATG
CTCTCATCGAAGCTGGGGCCCACATGGACGCCACCAATACCTTCAAAAAGACTGCCTATGAGCTGCTGGA
CTCGAAGCTGTTGGCCAAGAGCACCGTGCAGCCCTTCAATTATGTGACACTGCAGTGCCTAGCTGCCCGT
GCCCTGGACAGGAACAAGGTCCCTTATAAGGGCTTCATCCCAGAGGAGCTGGAGGCCTTCATCCAGTTGC
ACTGA

Translation (654 aa):
MDLHTAVYNAAHDGKLPLLQKLLASRGREELEELLGEVAGGGTPLLIAARRGHLDVVEYLVDHCGASVEA
SGSVHFDGETIEGAPPLWAASAAGHLAVVRSLLHRGASVNRTTCTNSTPLRAACFNGHLDVVRCLVGEHK
ADLEVANRHGHTCLMISCYKGHREIARYLLERGAQVNRRSAKGNTALHDCAESGSLEILQLLLSCHARME
RDGYGMTPLLAASITGHTNIVEYLIQEQPSHEQLSGTELPGEGSSQMAGNHCSTPEDAEQYESCCPTSRE
AAVEALELLGATYVDKKRDLLGALKHWRRAMELRHQGGGFLPKPEPQQLVLAYDYSREVTTPQELEALIT
DPDEMRMQALLIRERILGPSHPDTSYYIRYRGAVYADSGNFERCIRLWKYALDMQQNNLEPLSPMTASSF
LSFAELFSYVLQDHSAKGNLGMQLDFADLIGVLSKGVREVERALQLPKEPDDSAQFTKAIAIILHLLYLL
EKVECTPRQEHLKHQTVYRLLKCAPRGKNGFTPLHMAVDKETTNVGQYHVGVFPSLQVVKVLLDCGADPD
SRDFDNNSPLHIAAQNNCPAIMDALIEAGAHMDATNTFKKTAYELLDSKLLAKSTVQPFNYVTLQCLAAR
ALDRNKVPYKGFIPEELEAFIQLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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