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Report for CCDS24077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24077.1 Public Mus musculus 10 Aldh1l2 23 108 98 CCDS HistoryNCBI Gene:216188Re-query CCDS DB by CCDS ID:24077.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24077.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020497.13 ENSMUSP00000020497.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020497.13Link to Ensembl Protein Viewer:ENSMUSP00000020497.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020497Re-query CCDS DB by Protein ID:ENSMUSP00000020497
Original member Current member NCBI NM_153543.2 NP_705771.2 Accepted alive Link to Nucleotide Sequence:NM_153543.2Link to Protein Sequence:NP_705771.2Re-query CCDS DB by Nucleotide ID:NM_153543Re-query CCDS DB by Protein ID:NP_705771Link to BLAST:NP_705771.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705771.2 923 Q8K009 923 100% 0 0

Chromosomal Locations for CCDS 24077.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 83490579 83490634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83492475 83492674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83493429 83493534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83495869 83496034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83497472 83497570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83499839 83499938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83501894 83501987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83502442 83502529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83503942 83504047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83504126 83504196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83506598 83506748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83508015 83508142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83508613 83508732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83512290 83512437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83513583 83513674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83514455 83514580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83516048 83516182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83518344 83518433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83518633 83518734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83520270 83520435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83522702 83522936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83527305 83527449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 83533967 83534014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2772 nt):
ATGCTGTGGCGGGGTAGCCAGGCGCTACGGCACTTCTCCACCAGCCGGGTTTATTTCAAAAACAAGCTGA
AGTTGGCACTTATTGGCCAGAGCCTGTTCGGACAGGAAGTCTATAGCCAGCTCCTGAAAGAGGGCCACCG
AGTAGTGGGAGTGTTCACAGTGCCAGACAAGGATGGAAAGGCCGATCCACTGGCTTTGGCTGCAGAGAAA
GATGGGACTCCCGTGTTCAAGTTCCCTCGATGGAGACTCAAGGGTAAAACCATCAAGGAGGTAGCAGAAG
CTTACCAGTCGGTGGGAGCCGAGCTCAACGTGCTCCCCTTCTGCACACAGTTCATCCCCATGGATGTCAT
TGACAGCCCAAAGCATGGCTCCATCATCTACCACCCCTCACTCCTACCCAGGCACAGAGGAGCTTCTGCC
ATCAACTGGACACTAATCATGGGAGATAAGAAAGCTGGGTTTTCTGTTTTCTGGGCAGATGATGGTTTGG
ATACAGGACCCATCCTTCTTCAGAGATCGTGTGACGTCAAGCCCAATGACACAGTGGACTCGCTTTATAA
CCGGTTCCTTTTTCCTGAGGGGATCAAGGCCATGGTAGAAGCCGTCCAACTCATAGCTGATGGAAAAGCG
CCTCGCACTCCCCAGCCAGAAGAGGGGGCAACATATGAAGGCATCCAGAAGAAGGAGAACGCTGAGGTTT
CTTGGGACCAGCCTGCTGAAGGTTTGCATAACTGGATTCGAGGTCATGACAAGGTCCCTGGAGCCTGGGC
AGAGATCAATGGACAGATGGTGACTTTCTACGGCTCATCACTGTTGACTAGTTCTGTGCCTTCTGGAGAA
CCACTGGACATTAGAGGTGCCAAGAAGCCCGGTCTTGTCACCAAAAATGGCCTTGTCCTTTTTGGGAATG
ATGGAAAAGCACTGATGGTGAGAAACCTGCAGTTTGAGGACGGAAAGATGATTCCAGCCTCCCAGTACTT
TTCTGCGGGTGAGACATCAGTGGTAGAACTTACGGCCGAGGAGCTGAAGGTGGCAGAGACCATTAAGGTC
ATCTGGGCTCGAATTTTAAGCAACACCCCTGTGATTGAGGACTCCACGGACTTCTTTAAATCTGGAGCGA
GCTCAATGGATGTTGTGAGGCTGGTGGAAGAGATCAGACAGAGTTGCGGAGGGCTTCAGCTGCAGAATGA
AGACGTCTACATGGCCACCAAGTTTGGAGATTTCATCCAAAAGGTTGTGCGGAGACTGAGAGGAGAGGAC
GAAGAGGCAGAGATGGTGGTGGATTACGTTTCCAAGGAGGTGAACGGGATGACAGTGAAAATCCCCTACC
AGTGTTTCATAAATGGACAGTTTGTGGATGCCGAGGATGGAGAGACTTACGCCACTGTCAACCCCACAGA
TGGAACTACAATATGCAGAGTGTCCTACGCTTCTTTAGCGGATGTTGACAGAGCAGTAGCCGCAGCCAAG
GACGCCTTTGAGAACGGCGAATGGGGGAGGATGAACGCCAGAGACAGAGGAAGACTCATGTACAGACTCG
CTGACCTAATGGAAGAAAACCAAGAAGAGCTGGCCACCATAGAAGCGCTGGATTCCGGGGCTGTCTACAC
CCTGGCTCTGAAGACTCACATTGGAATGTCTGTGCAGACGTTCAGATACTTCGCAGGCTGGTGTGACAAA
ATTCAGGGTTCTACAATTCCAATCAACCAGGCCCGGCCGAATTACAACCTGACCTTCACCAAGAAGGAGC
CACTTGGTGCCTGTGCCATTATCATTCCTTGGAACTACCCACTGATGATGCTGGCCTGGAAGAGCGCAGC
GTGCCTGGCGGCAGGCAACACCCTGGTGCTCAAGCCTGCACAGGTCACACCCTTGACGGCTCTGAAGTTT
GCAGAGCTGACCGTGAAAGCTGGCTTTCCCAAGGGGGTGATTAACATCATTCCAGGCTCAGGGGGTGTCG
CAGGACAGAGGCTCTCTCAGCACCCTGACATCCGCAAGCTTGGCTTCACTGGATCCACCTCAGTGGGCAA
ACAGATCATGAAAAGCTGTGCTGTGAGCAACCTGAAGAAAGTTTCCCTTGAGCTTGGTGGCAAATCCCCA
CTGATAATATTCAGTGATTGTGACCTTGAAAAGGCTGTACGGATGGGCATGGGCGCAGTGTTTTTCAATA
AAGGAGAGAACTGCATTGCAGCTGGGCGGCTGTTTGTGGAAGAGGCCATCCACGACGAATTCGTAACCAG
AGTGGTGGAAGAGATTAAAAAGATGAAAATTGGAGATCCCCTGGACAGATCTACGGACCATGGGCCCCAG
AACCACAGAGCGCACTTGGAAAAGCTGCTGCAGTACTGTGAGACTGGGGTGCAGGAGGGGGCCACACTGG
TGTATGGAGGAAGACAGGTGCAGAGGCCAGGCTTCTTCATGGAACCCACTGTGTTCACAGGCGTGGAAGA
TCACATGTACCTTGCCAAGGAGGAATCCTTTGGGCCTATCATGGTCATTTCTAAATTCCAAAATGGGGAC
ATCGATGGGGTGTTGCAGAGAGCAAATAACACTGAATATGGCTTGGCCTCAGGGGTCTTCACAAGAGACA
TCAACAAAGCCATGTATGTGAGTGACAAGCTAGAGGCGGGAACGGTTTTCATTAACACCTACAACAAGAC
AGACGTGGCAGCCCCATTTGGTGGAATGAAGCAATCTGGCTTTGGAAAAGACTTAGGTGAGGAGGCCCTG
AATGAATACCTGAAAATCAAAACAGTGACACTCGAGTATTAG

Translation (923 aa):
MLWRGSQALRHFSTSRVYFKNKLKLALIGQSLFGQEVYSQLLKEGHRVVGVFTVPDKDGKADPLALAAEK
DGTPVFKFPRWRLKGKTIKEVAEAYQSVGAELNVLPFCTQFIPMDVIDSPKHGSIIYHPSLLPRHRGASA
INWTLIMGDKKAGFSVFWADDGLDTGPILLQRSCDVKPNDTVDSLYNRFLFPEGIKAMVEAVQLIADGKA
PRTPQPEEGATYEGIQKKENAEVSWDQPAEGLHNWIRGHDKVPGAWAEINGQMVTFYGSSLLTSSVPSGE
PLDIRGAKKPGLVTKNGLVLFGNDGKALMVRNLQFEDGKMIPASQYFSAGETSVVELTAEELKVAETIKV
IWARILSNTPVIEDSTDFFKSGASSMDVVRLVEEIRQSCGGLQLQNEDVYMATKFGDFIQKVVRRLRGED
EEAEMVVDYVSKEVNGMTVKIPYQCFINGQFVDAEDGETYATVNPTDGTTICRVSYASLADVDRAVAAAK
DAFENGEWGRMNARDRGRLMYRLADLMEENQEELATIEALDSGAVYTLALKTHIGMSVQTFRYFAGWCDK
IQGSTIPINQARPNYNLTFTKKEPLGACAIIIPWNYPLMMLAWKSAACLAAGNTLVLKPAQVTPLTALKF
AELTVKAGFPKGVINIIPGSGGVAGQRLSQHPDIRKLGFTGSTSVGKQIMKSCAVSNLKKVSLELGGKSP
LIIFSDCDLEKAVRMGMGAVFFNKGENCIAAGRLFVEEAIHDEFVTRVVEEIKKMKIGDPLDRSTDHGPQ
NHRAHLEKLLQYCETGVQEGATLVYGGRQVQRPGFFMEPTVFTGVEDHMYLAKEESFGPIMVISKFQNGD
IDGVLQRANNTEYGLASGVFTRDINKAMYVSDKLEAGTVFINTYNKTDVAAPFGGMKQSGFGKDLGEEAL
NEYLKIKTVTLEY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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