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Report for CCDS48620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48620.1 Public Mus musculus 10 Shc2 23 108 98 CCDS HistoryNCBI Gene:216148Re-query CCDS DB by CCDS ID:48620.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48620.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020564.6 ENSMUSP00000020564.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020564.6Link to Ensembl Protein Viewer:ENSMUSP00000020564.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020564Re-query CCDS DB by Protein ID:ENSMUSP00000020564
Original member Current member NCBI NM_001024539.1 NP_001019710.1 Accepted alive Link to Nucleotide Sequence:NM_001024539.1Link to Protein Sequence:NP_001019710.1Re-query CCDS DB by Nucleotide ID:NM_001024539Re-query CCDS DB by Protein ID:NP_001019710Link to BLAST:NP_001019710.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019710.1 573 Q8BMC3 573 100% 0 0

Chromosomal Locations for CCDS 48620.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79621059 79621187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79622255 79622565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79623827 79623991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79626093 79626156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79626255 79626420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79626800 79626926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79627020 79627071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79627195 79627248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79629823 79629942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79630068 79630128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79631265 79631335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79637449 79637850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1722 nt):
ATGACGCAGGGTCCGGGTGGCCGCGCGGCCCCCGAGCCCGAGGCGCCCACCACCTTCTGCGCACTGCTGC
CGCGGATGCCGCAGTGGAAGTTCGCAGCGCCGGGTAGCTTCCTGGGCCGCGGTCCCGCGGCGACGCGCGT
GGCGGGGGTGGCAGAGGCGCAGCCGGAGCCCGGGGTCCCCGCGCTGGCCGCTGTGTTGGGCGCTTGCGAA
CCGCGCTGCGCCGCGCCCTGTCCGCTGCCCGCGCTCGGCCGCTGCCGGGGCTCGGGGACGCGGGGCGCGC
GGGTGACTCCGGATGTCGCTGACGAGTGGGTGCGCAAGGGCGGCTTCATTCACAAGCCGGCGCACGGCTG
GTTGCATCCCGATGCCAGGGTCCTGGGGCCCGGGGTCTCTTACATCGTTCGGTACATGGGCTGCATTGAG
GTGCTTCGATCCATGCGCTCCCTGGATTTCAACACCCGAACACAGGTGACGAGGGAAGCCATCAATCGGC
TCCATGAGGCTGTGCCCGGTGTCCGGGGCTCCTGGAAGAAGAAGGCCCCCAACAAGGCTCTGGCCTCCAT
CTTGGGGAAAAGCAACCTGCGCTTCGCCGGCATGAGCATCTCAGTCAACATCTCCGTGGACGGCCTTAAC
TTGTCTGTTCCCGCCACCCGCCAGATCATCGCCAACCATCATATGCAGTCTATTTCCTTCGCCTCGGGTG
GTGACACGGACATGACTGATTACGTGGCCTATGTGGCCAAGGACCCCATCAACCAGAGAGCCTGCCACAT
CTTGGAATGCTGTGAAGGTCTTGCCCAGAGCGTCATCAGCACCGTAGGGCAAGCCTTTGAGCTGCGCTTC
AAGCAATACCTGCACAGTCCGCCCAAGGCGGTAGTGCCCCCTGAAAGGCTGACTGGGCTGGAGGAGTTGG
CCTGGGGAGATGATGACGCTGCTGCAGACCACAATTACTACAACAGCATTCCGGGAAAGGAGCCACCCCT
GGGCGGGCTGGTGGACTCCAGACTGGCTGTCACACAGCCCTGTGCGCTGGCGACACTCGGGGGCCTTGGA
CAGGGAATGACACCAGTATGGAGAGATGCCCGTGGCTTGCCTTGGGACATGGGCCCCTCTGGAGCAGCCC
CACCGGGGGATGGCTACGTGCAGGCAGATGCCCGAGGGCCACATGACTACGAGGAGCACCTGTATGTCAA
TACCCAGGGCCTGGATGCTGTGGAGCTTGAGGACACCGCCGAGGCACCTCTGCAGTTTGAGGACAGCCCC
AAGAAGGACCTGTTTGACATGCGACCCTTTGAAGATGCCCTGAAGTTGCACGCGTGCTCAGTGGCAGCCG
GCATCACTGCAGCCTCACCCCCTCTGGAAGACCAGTGGCCCAGTCCCCCTACCCGCAGGGCCCCCATTGC
ACCCACAGAGGAGCAATTGAGGCAGGAGCCCTGGTACCACGGACGAATGAGCCGTCGGGCTGCAGAGAAG
CTGCTTCGGGCCGATGGGGACTTCCTTGTGAGAGACAGCGTCACCAACCCGGGGCAGTATGTCCTCACGG
GCATGCATGCGGGGCAGCCCAAGCACCTGCTGCTGGTGGACCCCGAGGGTGTGGTGCGGACGAAAGATGT
GTTGTTTGAGAGCATCAGCCACCTCATAGACTATCACCTGAAGAATGGGCTGCCTATCGTGGCTGCTGAG
AGCGAGCTGCATCTGCGGGGAGTGGTCTCTCGGGAGCCATGA

Translation (573 aa):
MTQGPGGRAAPEPEAPTTFCALLPRMPQWKFAAPGSFLGRGPAATRVAGVAEAQPEPGVPALAAVLGACE
PRCAAPCPLPALGRCRGSGTRGARVTPDVADEWVRKGGFIHKPAHGWLHPDARVLGPGVSYIVRYMGCIE
VLRSMRSLDFNTRTQVTREAINRLHEAVPGVRGSWKKKAPNKALASILGKSNLRFAGMSISVNISVDGLN
LSVPATRQIIANHHMQSISFASGGDTDMTDYVAYVAKDPINQRACHILECCEGLAQSVISTVGQAFELRF
KQYLHSPPKAVVPPERLTGLEELAWGDDDAAADHNYYNSIPGKEPPLGGLVDSRLAVTQPCALATLGGLG
QGMTPVWRDARGLPWDMGPSGAAPPGDGYVQADARGPHDYEEHLYVNTQGLDAVELEDTAEAPLQFEDSP
KKDLFDMRPFEDALKLHACSVAAGITAASPPLEDQWPSPPTRRAPIAPTEEQLRQEPWYHGRMSRRAAEK
LLRADGDFLVRDSVTNPGQYVLTGMHAGQPKHLLLVDPEGVVRTKDVLFESISHLIDYHLKNGLPIVAAE
SELHLRGVVSREP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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