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Report for CCDS35933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35933.1 Public Mus musculus 10 Ube2d1 23 108 98 CCDS HistoryNCBI Gene:216080Re-query CCDS DB by CCDS ID:35933.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35933.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020085.6 ENSMUSP00000020085.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020085.6Link to Ensembl Protein Viewer:ENSMUSP00000020085.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020085Re-query CCDS DB by Protein ID:ENSMUSP00000020085
Original member NCBI NM_145420.2 NP_663395.1 Updated not alive Link to Nucleotide Sequence:NM_145420.2Link to Protein Sequence:NP_663395.1Re-query CCDS DB by Nucleotide ID:NM_145420Re-query CCDS DB by Protein ID:NP_663395
Current member NCBI NM_145420.3 NP_663395.1 Accepted alive Link to Nucleotide Sequence:NM_145420.3Link to Protein Sequence:NP_663395.1Re-query CCDS DB by Nucleotide ID:NM_145420Re-query CCDS DB by Protein ID:NP_663395Link to BLAST:NP_663395.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663395.1 147 P61080 147 100% 0 0

Chromosomal Locations for CCDS 35933.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 71255829 71255874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71256615 71256708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71258201 71258306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71259742 71259819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71262084 71262115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71262199 71262262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 71285101 71285124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (444 nt):
ATGGCGCTGAAGCGGATCCAGAAAGAATTAAGTGATTTACAGCGTGATCCACCTGCCCACTGCTCAGCGG
GACCCGTGGGAGATGACTTGTTCCACTGGCAAGCAACCATCATGGGGCCCCCTGACAGCGCCTATCAAGG
TGGAGTCTTCTTCCTCACTGTCCACTTTCCGACAGACTATCCCTTTAAACCACCAAAGATTGCTTTCACA
ACAAAAATCTACCACCCAAATATAAACAGCAACGGGAGTATTTGTCTTGACATCCTGAGGTCCCAGTGGT
CGCCCGCTTTGACTGTATCGAAAGTCTTGCTGTCCATATGCTCGCTGCTCTGTGATCCTAATCCAGACGA
TCCCTTAGTACCAGATATTGCACAGATCTATAAATCAGACAAAGAAAAATACAACAGGCACGCAAGAGAA
TGGACTCAGAAATATGCAATGTAA

Translation (147 aa):
MALKRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFT
TKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHARE
WTQKYAM


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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