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Report for CCDS35720.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35720.1 Public Mus musculus 1 Nav1 23 108 98 CCDS HistoryNCBI Gene:215690Re-query CCDS DB by CCDS ID:35720.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35720.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067414.12 ENSMUSP00000067241.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067414.12Link to Ensembl Protein Viewer:ENSMUSP00000067241.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000067414Re-query CCDS DB by Protein ID:ENSMUSP00000067241
Original member Current member NCBI NM_173437.2 NP_775613.2 Accepted alive Link to Nucleotide Sequence:NM_173437.2Link to Protein Sequence:NP_775613.2Re-query CCDS DB by Nucleotide ID:NM_173437Re-query CCDS DB by Protein ID:NP_775613Link to BLAST:NP_775613.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775613.2 1875 Q8CH77-1 1875 100% 0 0

Chromosomal Locations for CCDS 35720.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 135441684 135441779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135443634 135443831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135448931 135449049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135449895 135450091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135450570 135450641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135450786 135450940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135452172 135452407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135452805 135452964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135453193 135453288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135454045 135454142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135454434 135454602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135454691 135454883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135455134 135455330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135457861 135457869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135458656 135458777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135460344 135460455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135460691 135460774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135463722 135463799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135463915 135463938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135464706 135464758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135465839 135466009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135467641 135467789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135468856 135468897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135469632 135470066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135470480 135471170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135472159 135472456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135472733 135472871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135532349 135532714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135537197 135537299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 135584555 135585320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5628 nt):
ATGCTGGGCAGCAGCGTCAAGAGCGTGCAGCCCGAGGTGGAGCTGAGCGGCGGCAGCGGCAGCGGCGGCG
ACGAGGGCGCGGACGAGTCTCGGGGAGCCAGCAGAAAGGCAGCCGCGGCGGACGGCAGAGGCATGCTGCC
CAAGCGCGCCAAGGCGGCAGGAGGCAGTGGCAGTATGGCCAAGGCCAGTGCAGCGGAGCTGAAGGTCTTC
AAGTCCGGCAGCGTGGACAGTCGTGTCCCCGGCGGGCTGCCTACCTCCAACCTGCGCAAACAGAAGTCGC
TCACCAACCTCTCGTTTCTCACGGACTCCGAGAAAAAGCTGCAGCTGTATGAGCCTGAGTGGAGTGATGA
TATGGCCAAAGCACCCAAGGGTTTGGGCAAACTGGGGCCCAAGGGCCGCGAGACTCCTCTGATGTCCAAG
ACGCTGTCCAAGTCTGAGCATTCGCTCTTCCAACCCAAAGGTGGCTCAACCGGCGGCGCCAAGACCCCAC
TGGCTCCGCTAGCGCCCAGCCTAGGCAAACCTAGCCGGATTCCTCGGGGACCCTATGCGGAGGTCAAGCC
TCTCAGCAAGGCGCCTGAGGCAGCGGTAAGCGATGATGGCAAATCGGATGACGAACTGCTTTCCAGCAAG
GCTAAAGCGCAAAAGGGCTCAGGGACTGTGCCCTCTGCCAAGGGCCAGGAGGAGCGGGCCTTCCTCAAGG
TGGACCCCGAGCTTGTGGTTACCGTGCTGGGCGACCTAGAACAGCTACTCTTCAGCCAGATGCTAGATCC
AGAGTCGCAGAGAAAGAGAACAGTACAGAACGTTCTGGATCTCCGACAGAACCTGGAAGAAACCATGTCC
AGCCTGCGAGGCTCCCAGGTGACTCACAGCTCCCTGGAGATGCCTTGTTACGACAGCGATGACGCCAACC
CCCGAAGCGTGTCCAGTCTCTCCAACCGCTCCTCTCCGCTCTCTTGGCGCTACGGCCAGTCTAGTCCCCG
GCTGCAGGCTGGCGACGCACCCTCTGTTGGGGGGAGCTGTCGTTCCGAGGGGCCACCGGCCTGGTACATG
CATGGCGAGCGGGCACACTACTCCCACACCATGCCGATGCGGAGCCCCAGCAAACTCAGCCACATCTCTC
GCCTGGAGTTGGTGGAGTCCCTGGACTCTGACGAGGTGGACCTCAAATCCGGCTACATGAGTGACAGTGA
CCTCATGGGCAAGACCATGACAGAAGACGATGACATCACAACGGGCTGGGATGAAAGCAGCTCCATTAGC
AGTGGGCTCAGCGATGCCTCCGACAACCTCAGCTCAGAAGAGTTCAATGCCAGCTCCTCACTCAACTCCC
TCCCAACCACTCCCACTGCCTCCCGCAGGAGCTCCACTATAGTGTTACGCACAGACTCGGAGAAGCGCTC
CCTGGCGGAGAGTGGGCTCAACTGGTTCAGTGAGTCAGAGGAGAAGACCCCTAAAAAACTGGAGTACGAC
AGTGGTAGCCTGAAGATGGAACCTGGGACTTCAAAGTGGCGGAGAGAGAGACCAGAGAGCTGCGATGACG
CATCCAAGGGCGGAGAACTGAAAAAGCCCATCAGCCTGGGACACCCAGGGTCCTTGAAAAAGGGCAAGAC
CCCTCCGGTGGCTGTCACCTCTCCCATCACTCACACCGCCCAGAGTGCCCTCAAAGTCGCAGGCAAACCT
GAAGGCAAAGCTACAGACAAGGGTAAACTCGCAGTGAAGAACACTGGGCTACAACGCTCCTCTTCTGATG
CTGGCCGGGACCGCCTGAGTGATGCTAAGAAGCCCCCCTCAGGCATTGCTCGGCCCTCTACTTCAGGATC
CTTTGGTTATAAGAAGCCTCCCCCTGCTACTGGCACAGCCACTGTCATGCAGACCGGTAGCTCAGCCACC
CTCAGCAAGATCCAGAAGTCCTCAGGGATCCCTGTGAAGCCAGTAAACGGGCGCAAGACGAGTTTAGACG
TGTCCAACAGTGTAGAGCCCGGATTTCTCGCCCCTGGAGCACGGTCCAACATCCAGTATCGCAGCCTACC
CAGGCCAGCCAAGTCCAGTTCTATGAGTGTGACTGGGCGTGGTGGACCTCGGCCTGTTAGCAGCAGCATT
GACCCCAGCCTCCTCAGCACCAAGCAGGGTGGCCTTACACCCTCCAGACTGAAGGAACCTTCCAAGGTCG
CCAGTGGTCGGAGCACTCCAGCCCCTGTCAATCAGACAGATCGGGAAAAGGAGAAGGCCAAAGCCAAGGC
TGTGGCCCTGGACTCAGACAACATCTCCTTGAAGAGCATAGGCTCCCCAGAAAGCACTCCCAAGAACCAA
GCAAGCCACCCTCCAGCCACCAAGTTAGCAGAGCTGCCACCAACCCCTCTCAGGGCCACAGCTAAAAGCT
TTGTCAAGCCACCCTCGCTAGCCAATCTAGACAAAGTCAACTCCAACAGTTTGGATCTACCATCTTCCAG
CGACACCCATGCTTCCAAGGTCCCAGATCTGCATGCTCCGAGCTCATCAACTGGGGGCCCTCTCCCTTCT
TGCTTCACTCCCAGCCCAGCACCCATCCTCAATATTAACTCAGCCAGCTTCTCCCAGGGCCTGGAGCTAA
TGAGTGGTTTCAGTGTCCCAAAGGAGACCCGCATGTACCCCAAACTCTCAGGCCTGCACAGGAGCATGGA
GTCCCTCCAGATGCCAATGAGCCTGCCCAGTGCCTTCCCCAGCAGCGCCCCCATCCCTACCCCACCTACT
GCCCCATCAGAGGAAGACACAGAAGAGCTGCCCTGGAGTGGAAGCCCCAGGGCTGGACAATTGGACAGCA
GTCAGCGAGATCGGAATACCCTCCCCAAGAAAGGGCTCAGGTACCAGCTTCAGTCCCAGGAGGAGACCAA
GGAGAGGCGGCACTCCCACACTGCCGGTGGGCTTCCAGAATCCGACGACCAGGCAGAGCTGCCATCCCCC
CCTGCTCTCTCCATGTCCTTGAGTGCAAAGGGCCAGCTTACCAACATAGTGAGTCCCACTGCGGCCACCA
CGCCAAGAATCACCCGATCCAACAGCATCCCCACCCACGAGGCGGCCTTCGAGCTGTACAGCGGCTCCCA
AATGGGGAGCACCCTGTCCCTGGCCGAGAGACCCAAGGGAATGATTCGGTCAGGATCCTTCCGAGACCCC
ACGGATGATGTTCATGGCTCGGTGCTGTCTCTGGCCTCCAGTGCTTCTTCTACCTACTCCTCAGCTGAGG
AGAGGATGCAATCTGAGCAAATTCGGAAGCTTCGTAGGGAGCTGGAGTCGTCCCAGGAAAAGGTGGCCAC
CCTGACATCTCAGCTGTCTGCCAACGCTAACCTAGTGGCCGCTTTCGAGCAGAGCCTGGTGAATATGACA
TCCCGCCTGCGACACCTGGCAGAGACGGCCGAGGAGAAGGACACCGAGCTGTTGGATTTGCGAGAAACTA
TAGACTTCCTGAAGAAAAAGAATTCCGAGGCCCAGGCAGTCATCCAGGGAGCGTTAAATGCCTCAGAAGC
CACGCCCAAAGAACTCCGGATCAAGAGGCAGAATTCCTCAGATAGCATCTCCAGCCTCAACAGCATCACC
AGCCATTCCAGCATCGGCAGCAGCAAAGATGCTGATGCCAAGAAGAAAAAGAAGAAGAGTTGGGTTTATG
AGCTTCGGAGTTCCTTCAACAAAGCCTTCAGTATTAAAAAGGGTCCCAAGTCAGCCTCCTCCTACTCTGA
CATTGAAGAGATTGCCACACCTGACTCCTCAGCCCCATCATCCCCCAAACTCCAACACGGCTCCACTGAG
ACTGCCTCCCCCTCCATCAAGTCCTCCACCTCATCCTCTGTGGGCACCGAGGTCACCGAGACCCCTGCTC
ATTCAGTCCCCCACACTAGACTGTTCCAAGCCAATGAAGAGGAGGAGCCAGAGAAGAAGGAGGTATCAGA
ACTGCGCTCTGAACTATGGGAAAAAGAGATGAAGCTCACGGATATCCGGTTGGAGGCCCTCAACTCTGCC
CACCAGCTGGACCAGCTTCGGGAGACCATGCACAATATGCAGTTGGAGGTGGACCTGCTGAAAGCAGAGA
ATGACCGGCTGAAGGTTGCCCCCGGCCCCTCCTCAGGCTGCACTCCAGGGCAGGTCCCTGGGTCATCGGC
TCTGTCGTCCCCTCGACGTTCCCTGGGCCTTGCACTCAGCCATCCTTTCAGTCCTAGTCTCACAGACACA
GACCTCTCACCCATGGATGGCATCAGCACCTGTGGTTCAAAGGAAGAGGTGACCCTGCGGGTGGTGGTCC
GGATGCCGCCCCAGCACATCATCAAAGGGGACTTAAAGCAGCAGGAGTTCTTCCTGGGTTGCAGCAAGGT
CAGTGGCAAAGTTGACTGGAAGATGCTGGATGAAGCCGTTTTCCAAGTGTTCAAGGACTACATTTCTAAA
ATGGACCCAGCCTCAACCCTGGGACTGAGCACTGAGTCCATACATGGCTATAGCCTCAGCCACGTGAAAC
GAGTGCTGGATGCTGAGCCCCCAGAGATGCCTCCTTGCCGCCGAGGTGTCAATAACATATCAGTCGCTCT
CAAAGGTCTGAAAGAGAAGTGTGTCGACAGCCTGGTGTTCGAGACGCTTATCCCCAAGCCCATGATGCAG
CACTACATCAGCCTCCTGCTCAAGCACCGGCGCCTGGTGCTCTCCGGCCCCAGTGGCACCGGCAAGACCT
ACTTGACCAATCGGCTAGCCGAGTACCTGGTGGAGCGCTCCGGCCGCGAGGTCACGGATGGCATCGTCAG
CACTTTCAACATGCACCAGCAGTCTTGCAAGGATCTGCAACTGTACCTCTCCAACCTAGCCAACCAGATA
GACCGGGAAACAGGGATAGGGGATGTGCCCTTGGTGATCCTCCTGGATGATCTGAGTGAAGCAGGCTCCA
TCAGTGAGCTGGTCAATGGGGCCCTCACCTGCAAGTATCACAAATGTCCCTACATTATAGGTACCACCAA
TCAGCCTGTAAAAATGACACCCAACCATGGCTTGCACTTGAGCTTCAGGATGCTGACCTTCTCGAACAAT
GTGGAACCAGCCAATGGCTTTCTGGTCCGTTACCTGCGGAGGAAGTTGGTAGAGTCAGACAGTGACGTCA
ATGCTAACAAGGAAGAGCTGCTTCGGGTGCTGGACTGGGTGCCCAAGCTGTGGTATCACCTCCACACCTT
CCTGGAGAAGCACAGCACCTCGGACTTCCTCATTGGCCCTTGCTTCTTCCTGTCCTGTCCCATTGGCATC
GAGGACTTCCGGACCTGGTTCATTGACCTGTGGAACAATTCCATCATCCCCTATCTACAGGAAGGAGCCA
AGGATGGGATCAAGGTTCATGGACAGAAAGCTGCTTGGGAAGACCCGGTGGAATGGGTCCGAGACACTCT
TCCCTGGCCGTCGGCCCAACAAGACCAATCAAAGCTCTACCACCTGCCCCCGCCTTCTGTGGGCCCCCAC
AGCACTGCCTCACCCCCGGAGGACAGGACAGTCAAAGACAGCACTCCAAACTCCCTCGACTCAGATCCCC
TGATGGCCATGCTACTGAAACTCCAAGAAGCTGCCAACTACATTGAGTCACCAGATCGAGAGACTATCCT
GGACCCCAACCTCCAGGCGACACTCTGA

Translation (1875 aa):
MLGSSVKSVQPEVELSGGSGSGGDEGADESRGASRKAAAADGRGMLPKRAKAAGGSGSMAKASAAELKVF
KSGSVDSRVPGGLPTSNLRKQKSLTNLSFLTDSEKKLQLYEPEWSDDMAKAPKGLGKLGPKGRETPLMSK
TLSKSEHSLFQPKGGSTGGAKTPLAPLAPSLGKPSRIPRGPYAEVKPLSKAPEAAVSDDGKSDDELLSSK
AKAQKGSGTVPSAKGQEERAFLKVDPELVVTVLGDLEQLLFSQMLDPESQRKRTVQNVLDLRQNLEETMS
SLRGSQVTHSSLEMPCYDSDDANPRSVSSLSNRSSPLSWRYGQSSPRLQAGDAPSVGGSCRSEGPPAWYM
HGERAHYSHTMPMRSPSKLSHISRLELVESLDSDEVDLKSGYMSDSDLMGKTMTEDDDITTGWDESSSIS
SGLSDASDNLSSEEFNASSSLNSLPTTPTASRRSSTIVLRTDSEKRSLAESGLNWFSESEEKTPKKLEYD
SGSLKMEPGTSKWRRERPESCDDASKGGELKKPISLGHPGSLKKGKTPPVAVTSPITHTAQSALKVAGKP
EGKATDKGKLAVKNTGLQRSSSDAGRDRLSDAKKPPSGIARPSTSGSFGYKKPPPATGTATVMQTGSSAT
LSKIQKSSGIPVKPVNGRKTSLDVSNSVEPGFLAPGARSNIQYRSLPRPAKSSSMSVTGRGGPRPVSSSI
DPSLLSTKQGGLTPSRLKEPSKVASGRSTPAPVNQTDREKEKAKAKAVALDSDNISLKSIGSPESTPKNQ
ASHPPATKLAELPPTPLRATAKSFVKPPSLANLDKVNSNSLDLPSSSDTHASKVPDLHAPSSSTGGPLPS
CFTPSPAPILNINSASFSQGLELMSGFSVPKETRMYPKLSGLHRSMESLQMPMSLPSAFPSSAPIPTPPT
APSEEDTEELPWSGSPRAGQLDSSQRDRNTLPKKGLRYQLQSQEETKERRHSHTAGGLPESDDQAELPSP
PALSMSLSAKGQLTNIVSPTAATTPRITRSNSIPTHEAAFELYSGSQMGSTLSLAERPKGMIRSGSFRDP
TDDVHGSVLSLASSASSTYSSAEERMQSEQIRKLRRELESSQEKVATLTSQLSANANLVAAFEQSLVNMT
SRLRHLAETAEEKDTELLDLRETIDFLKKKNSEAQAVIQGALNASEATPKELRIKRQNSSDSISSLNSIT
SHSSIGSSKDADAKKKKKKSWVYELRSSFNKAFSIKKGPKSASSYSDIEEIATPDSSAPSSPKLQHGSTE
TASPSIKSSTSSSVGTEVTETPAHSVPHTRLFQANEEEEPEKKEVSELRSELWEKEMKLTDIRLEALNSA
HQLDQLRETMHNMQLEVDLLKAENDRLKVAPGPSSGCTPGQVPGSSALSSPRRSLGLALSHPFSPSLTDT
DLSPMDGISTCGSKEEVTLRVVVRMPPQHIIKGDLKQQEFFLGCSKVSGKVDWKMLDEAVFQVFKDYISK
MDPASTLGLSTESIHGYSLSHVKRVLDAEPPEMPPCRRGVNNISVALKGLKEKCVDSLVFETLIPKPMMQ
HYISLLLKHRRLVLSGPSGTGKTYLTNRLAEYLVERSGREVTDGIVSTFNMHQQSCKDLQLYLSNLANQI
DRETGIGDVPLVILLDDLSEAGSISELVNGALTCKYHKCPYIIGTTNQPVKMTPNHGLHLSFRMLTFSNN
VEPANGFLVRYLRRKLVESDSDVNANKEELLRVLDWVPKLWYHLHTFLEKHSTSDFLIGPCFFLSCPIGI
EDFRTWFIDLWNNSIIPYLQEGAKDGIKVHGQKAAWEDPVEWVRDTLPWPSAQQDQSKLYHLPPPSVGPH
STASPPEDRTVKDSTPNSLDSDPLMAMLLKLQEAANYIESPDRETILDPNLQATL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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