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Report for CCDS38232.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38232.2 Public Mus musculus 2 Gpat2 23 108 98 CCDS HistoryNCBI Gene:215456Re-query CCDS DB by CCDS ID:38232.2See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 38232.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 38232.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062211.3 ENSMUSP00000049619.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062211.3Link to Ensembl Protein Viewer:ENSMUSP00000049619.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000062211Re-query CCDS DB by Protein ID:ENSMUSP00000049619
Original member Current member NCBI NM_001081089.2 NP_001074558.2 Accepted alive Link to Nucleotide Sequence:NM_001081089.2Link to Protein Sequence:NP_001074558.2Re-query CCDS DB by Nucleotide ID:NM_001081089Re-query CCDS DB by Protein ID:NP_001074558Link to BLAST:NP_001074558.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074558.2 801 Q14DK4-1 801 100% 0 0

Chromosomal Locations for CCDS 38232.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 127427309 127427371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127427493 127427606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127428246 127428319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127428685 127428789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127428997 127429125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127430855 127430954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127431283 127431416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127431663 127431762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127431858 127432070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127432372 127432494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127432650 127432732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127432972 127433090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127433586 127433656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127433732 127433990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127434078 127434226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127434388 127434465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127434792 127434923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127435007 127435127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127435211 127435276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127435475 127435530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 127435845 127435961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGGATACCATGTTGAAATCCAACCCCCAAACCCAGCAGAGGAGTAACCACAATGGTCAAGAGACCAGCC
TTTGGTCCTCAAGCTTTGGGATGAAGATGGAGGCCATCACTCCATTCCTGGGAAAGTATCGCCCCTTTAT
GGGCCGCTGCTGCCAGACCTGTACTCCTAAGAGCTGGGAGTCCCTCTTCCACAGAAGCATAATGGACCTG
GGCTTCTGCAACGTGATCCTTGTGAAGGAGGAGAACACCAGGTTCCGGGGCTGGCTGGTTCGCAGGCTCT
GCTATTTCCTGTGGTCCCTGGAGCAGCACATACCCACCAGTTTTGATGCCTCCCAGAAGATCATGGAAAA
CACTGGGGTGCAGAACCTCCTCTCGGGGAGGGTTCCGGGAGCGGCTGGAGAAGGCCAGGCGCCTGAATTA
GTGAAGAAAGAGGTACAGCGTATCCTGGGCCACATTCAGACCACACCCCGCCCCTTCTTGCTCAGGCTGT
TCAGCTGGGCACTGCTGTGGTTCCTGAACCGCCTCTTCCTGAATGTACAACTTCACAAGGGACAGATGAA
GATGGTTCAGAAGGCTGTGCAGGAGGGCTCTCCACTTGTCTTCCTTTCTACACACAAGTCCCTCTTGGAT
GGATTCCTGCTGCCTTTTGTACTGTTCTCCCAAGGCCTCGGTGTGGTCCGTGTGGCTTTAGACTCCCGCA
CATGTTCCCCTGCTCTCAGAGCTCTATTGAGGAAACTTGGGGGACTTTTCCTGCCCCCAGAGGTCAACCT
CTCCTTGGACAACTCAGAGGGCATCCTTGCAAGGGCTGTGGTCCGTGCAACTGTGGAGGAGCTGCTTACT
AGTGGTCAGCCTCTGCTCATCTTCCTGGAAGAGCCCCCTGGGTCCCCAGGGCCCAGGCTTTCTGCCCTGG
GCCAGGCCTGGCTAGGAGTGGTAATCCAGGCGGTCCAGGCAGGCATTATCTCAGATGCCACACTGGTACC
AGTTGCCATTGCCTATGACCTGGTTCCAGATGCACCATGTAACATGAACCATGATTTGGCTCCCCTGGGG
CTATGGACAGGAGCCTTGGCTGTCTTTCGGAGACTGTGTAACTGCTGGGGCTGCAACCGTAGAGTCTGTG
TTCGGGTGCACCTTGCCCAGCCATTTTCCCTCCAGGAATACACCATCAATGCTAGAAGTTGCTGGGATAG
CAGGCAGACCCTGGAACACTTGTTGCAGCCCATTGTGCTAGGTGAATGTAGTGTTGTTCCGGACACTGAG
AAGGAGCAGGAGTGGACCCCACCAACTGGCCTCCTCCTGGCCCTTAAAGAGGAGGACCAGCTCCTGGTCA
GAAGACTGAGCCGGCATGTTCTGAGTGCCAGTGTGGCCAGCTCCGCAGTGATGAGCACAGCCATCATGGC
CACACTGCTTTTGCTGAAGCACCAAAAGGGTGTGGTCCTGTCACAGCTCCTGGGAGAATTCTCCTGGCTG
ACAGAGGAGACACTGCTCCGAGGTTTTGATGTGGGCTTCTCAGGGCAGCTGCGGTGCCTGGCCCAACATA
CACTGAGCCTATTGAGGGCACATGTGGTTCTGCTGCGTGTCCACCAAGGGGACTTGGTGGTGGTACCTCG
GCCTGGCCCAGGCCTCACACACCTGGCACGCTTGAGTATGGAATTGCTGCCAACCTTCCTGAGTGAGGCT
GTGGGTGCCTGTGCAGTGCGGGGGTTGCTGGCAGGCAGAGTACCACCTGAGGGGCCCTGGGAGCTGCAGG
GCATAGAGCTACTGAGTCAGAATGAACTGTACCGCCAGATCCTACTGCTGCTGCACCTGCTACCTCAAGA
CCTACTGCTGCCCCAGCCCTGCCAGTCTTCCTACTGCTACTGTCAGGAAGTGCTAGACCGGCTCATCCAG
TGTGGACTCCTAGTTGCTGAGGAGACTCCAGGCTCCCGGCCAGCCTGTGACACAGGAAGACAGCATCTGA
GTGCAAAGCTGCTGTGGAAGCCGAGTGGGGACTTTACTGACAGTGAGAGTGATGACTTTGAGGAGCCAGG
AGGCCGCTGCTTCAGGCTTAGCCAGCAATCCCGCTGCCCTGACTTCTTCCTCTTCCTCTGCCGCTTGCTC
AGTCCCATACTCAAGGCCTTCGCACAGGCGGCCACCTTCCTCCACTTAGGGCAGCTGCCAGATTCAGAGG
TGGCCTACTCAGAGAAGTTGTTCCAGTTTTTACAGGCCTGTGCCCAAGAAGAAGGGATCTTTGAGTGTGC
AGACCCAAACCTTGCTATCAGTGCAGTCTGGACGTTCAAAGATCTGGGGGTACTTCAGGAGATGCCTAGC
CCTACAGGACCCCAGCTCCACCTGTCCCCTACATTTGCCACCCGGGACAATCAGGACAAGCTGGAACAAT
TTATCCGACAGTTCATCTGCAGTTAG

Translation (801 aa):
MDTMLKSNPQTQQRSNHNGQETSLWSSSFGMKMEAITPFLGKYRPFMGRCCQTCTPKSWESLFHRSIMDL
GFCNVILVKEENTRFRGWLVRRLCYFLWSLEQHIPTSFDASQKIMENTGVQNLLSGRVPGAAGEGQAPEL
VKKEVQRILGHIQTTPRPFLLRLFSWALLWFLNRLFLNVQLHKGQMKMVQKAVQEGSPLVFLSTHKSLLD
GFLLPFVLFSQGLGVVRVALDSRTCSPALRALLRKLGGLFLPPEVNLSLDNSEGILARAVVRATVEELLT
SGQPLLIFLEEPPGSPGPRLSALGQAWLGVVIQAVQAGIISDATLVPVAIAYDLVPDAPCNMNHDLAPLG
LWTGALAVFRRLCNCWGCNRRVCVRVHLAQPFSLQEYTINARSCWDSRQTLEHLLQPIVLGECSVVPDTE
KEQEWTPPTGLLLALKEEDQLLVRRLSRHVLSASVASSAVMSTAIMATLLLLKHQKGVVLSQLLGEFSWL
TEETLLRGFDVGFSGQLRCLAQHTLSLLRAHVVLLRVHQGDLVVVPRPGPGLTHLARLSMELLPTFLSEA
VGACAVRGLLAGRVPPEGPWELQGIELLSQNELYRQILLLLHLLPQDLLLPQPCQSSYCYCQEVLDRLIQ
CGLLVAEETPGSRPACDTGRQHLSAKLLWKPSGDFTDSESDDFEEPGGRCFRLSQQSRCPDFFLFLCRLL
SPILKAFAQAATFLHLGQLPDSEVAYSEKLFQFLQACAQEEGIFECADPNLAISAVWTFKDLGVLQEMPS
PTGPQLHLSPTFATRDNQDKLEQFIRQFICS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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