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Report for CCDS57259.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57259.1 Public Mus musculus 3 Syde2 23 108 98 CCDS HistoryNCBI Gene:214804Re-query CCDS DB by CCDS ID:57259.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 57259.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039517.10 ENSMUSP00000041897.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039517.10Link to Ensembl Protein Viewer:ENSMUSP00000041897.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000039517Re-query CCDS DB by Protein ID:ENSMUSP00000041897
Original member Current member NCBI NM_001166064.1 NP_001159536.1 Accepted alive Link to Nucleotide Sequence:NM_001166064.1Link to Protein Sequence:NP_001159536.1Re-query CCDS DB by Nucleotide ID:NM_001166064Re-query CCDS DB by Protein ID:NP_001159536Link to BLAST:NP_001159536.1

Chromosomal Locations for CCDS 57259.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 145987999 145989169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145998466 145999110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146001323 146002413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146007016 146007142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146014258 146014439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146015596 146015827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 146019803 146020299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3945 nt):
ATGGCGGAGCCCCTGCGGAGGACGCTCGGCCGGCTCCGAGAGCGGCACGCTCCCGGCGCGCTCGGGCTGC
ACGCGGACTCCGTGGCGGCCTCGCTCTCCGAGGGACGCTCGCCGCCCCACGAGCTCGCGGGCCCCGGTAT
GGAGCGGCCCGCATGGGGGACCGAGCAGCCGGGCGCGCGGGTGCCATGGTCTCGCGGGGCGCAGGAGGCC
GCCGCTCTGGGCCGCGCGCTTGCTCGCGCCTCCCCAGGCGCCTGGGGCAGCGGCGACGACGACGGGGAGG
ACGAGGGCGCCGACTACTACGAGAACCTGCCGGCGGGCTGCGCGCCCGAGGGGGCGGAGGCGCTGCGGGC
CTCGCCTTCCCGAGCGCCGGGCTCCTCCCCGGGGATGGAGGGCGGCCGCCTGGAGACGGGCAGGCTGCAG
ACCCAGTTGCGAGAGGCCTATTATCTGCTGATCCAGGCCATGCACGACCTACCCCCTGACTCGGGCACGC
GGCGGGGCGGACCCGCGGGAGCCCGGGCTCAGGGCCAGCAGCCGCCTCTCCCCCGCGGCGCAGCCGTGCG
CCCAGCCTGCAGCCTCCGAGGCGGCGACCGCCCTCCGCAGCAGGTGTCCCCGCCCCGGTCGCCTCCGACG
GAGTCGAGAGAGGGACGGCCTCCCAGTCCTCGGATACAACTGTCCAGTTGCAGAAGTCTCGAGAGCCTCC
GCGTGAGCCGGCGGCCGCCTCTGCTCCAGCGGTGGGCGAGCGACAGCTGCATCAGGTGCGGTGCGCACCG
GGACAGGGACGAGCCCCAGCCACGTGGAGGTGGGATGGACGGCTGGAGCCCGGGCAGCCACAGGGCTGCT
ACGTCCGCCGCTCTCCTGCCTCCCATCTGCCATGACCCCAGCGGGTCCTCGGGACGACCCTTTAAGGATC
CTGTGGGGACCTCTGTGATATCCAGCAGCCAAGAGGACCATCCGGAGGATCTTCCCCTCAAGCCACCTGC
GGTGACTGTCAAGAAACTGCAGAAGTGGATGTACAAAGGACGTCTGCTGTCCCTGGGGATGAAGGGTCGC
GATCGCGGGACAGCACCCAAAGTTCCCGGAGCGCAGACAACCTCTCCAAATTTGGGCAGTTGGAAAGTGC
ATGAAAACCACGTCCTCTCGGTGACAACGGACCAAAGAATCACACTGACAGACTTATTTGAGAATGTCTA
TGGCTCTCCACTGAAGAAACGAGAACCTGAAGATGTAAGGGGTCCCGCCGAGCTTAGAGGTCACCAGCCC
CTTAACAACATCACAGTTTCAAAGAAGCGCAATTGGCTGTATCAGAGCACCCTGAGGTCTCAGAGTCTGG
ACGAGAGCAAGCGAAGCCAGGACAGACGCTATTTCTCCCTCTCTCCTGTGTCTCCACCCAAGCATTGGGT
ATCCCACAGGCCGCACTGCACACATGCGGTGTGTAATGCTGCCAGGGCTACGTTGTCCAGAAACGGCTCT
TCAGCCTTTAGCGAGGACAATGATGCGGACGATGAAGGAGAAATATGGTACAATCCCATCCCTGAGGATG
ACAGCTTGGGCATAGCACACGTCTTGAGTCTTGAGGAGGCAAACACCGCCGCCCTGAAGCTTCCTGTGAG
CATGTTGTCTGCCAGAGATCTGATGAAGGCGGAGCCTCCTAGTGAAGACAGAGGGGACGTGCAGACCTCA
CAGTCAAATGGAATTAATTCTGCAGATTCCATGCATTCTACAGAAATTATGCAGCACTGCAAACAAAGGT
TAGGGCACAGGACACAAGAAAGCCCGACGGCAGAGGATAGCCCTGTGTTGAAATCTGCTTCTACAGGTCC
CGGGATCATAGTCTCTACAAATAGGACTGAACTGAGAGCGATGGAGCCGTCTTCTCCAAGCCCCAGTCCT
GGGAAGAAAGGCAGTTCCATTACTTGGTCTTTACCAGATAAAATAAAGTCTCCACGCACTGTGAGGAAAC
TTTCTATGAAAATGAAAAGGTTGCCAGAATTCAGCCGAAAGCTGGGGGCCAGGGGAGCTTTGCACTATGT
GAATAATCCGGATAGCACCCCTCCTTTGTCTAAATGGAACTGTCGAGAAATTCCTCAGGGTGTCACTCTG
ACTTCCGGGAACACCACCAGGAACGTGATAAGCCGGTACCATCTTGATACCACCGTATCCTCTCGGCACA
GCTACCGGAAGAAACCCCTTGGGAGCTCGAAGTATTCCTGCAAGGGTGGGTACCTCAGCGACGGAGACTC
ACCCGAACTGAGAACTAGATCTAGCAAGCATGGATCGGAGCACAAACTTGGGAAAGGGAGAGAAACTGTC
CCAAGCAGTTGTAGCAAAAATGAACTAGACATCGGTGCCTTCAGACATTACAGCTTTGCGGATCAACCCA
AATGCTCGCAGTACATATCCGGCCTCATGAGCGTACACTTCTATGGAGCTGAGGGTTTAAAACCGCCCCG
GATAGATTCGAAAGATGTGTTTTGTGCCATTCAGGTAGACTCAGTGAACAAAGCCAGAACGGCCCTGCTC
ACCTGTCGGACGACCTTCTTAGACATGGACCACACGTTCAACATAGAGATTGAAAATGCGCAGCATCTGA
AGCTGGTGGTGTTCAGCTGGGAGCCCACGCCGAGGAGGAACCGCGTGTGCTGTCATGGCACAGTCGTCCT
GCCCGCTTTATTCAGAGTTACAAAAACGCATCAGCTGGCTGTCAAGCTGGAGCCCAGAGGCCTTATTTAC
GTCAAGGTGACCCTGATGGAACAGTGGGAGAATTCTCTGCACGGCCTGGATAAGAACCGCGAAGCGGTGA
TGTTCGGAGTCGACATTCAAAAAGTTGTAGAGAAAGAAAACGTAGGCTTGATGGTGCCGCTGCTGATACA
GAAATGCATCGTGGAGATTGAAAAGAGGGGTTGTCAGGTTGTAGGCCTGTATCGATTGTGTGGTTCAGCG
GCGGTGAAGAAAGAGCTTCGAGAGGCTTTTGAGAAGGACAGCAAGACTGTTGGTCTGTGTGAAAACCAGT
ACCCAGATATAAATGTAATAACAGGGGTTCTTAAGGACTACTTGAGAGAACTCCCTTCTCCCCTAATAAC
CAAGCAGCTGTATGAGGCTGTGTTGGATGCCATGGCGAAGAGTCCTTTGAAAATGTCGTCCAGTGGTTGT
GAGAACGAGCCCAGTGACTCCAGGCTCACTGTGGACCTCCTGGATTGCCTGCCGGACGTTGAGAAGGCAA
CCCTGAAGATGTTGTTGGATCATCTGAAACTGGTGGCCTCCTACCACGAAGTGAATAAGATGACCTGCCA
GAATTTGGCTGTGTGCTTTGGACCAGTGTTGCTTAACCAGAGGCAAGAGGCTTCAACCCACAACAACAGA
GTCTTCACCGATTCTGAAGAGCTTGCCAGTGCTTTGGATTTTAAAAAACACATCGAGGTTCTTCATTACT
TGCTCCAGCTCTGGCCAGTGCAACGCTTAACTGTCAAAGAACCCAGAGACAGTTTGTGCCTGGAGCAGTC
GTCTTCTCTGAATTACTTGAGGCGAAAGAAAGAGCGGCCGTGTGTGTTAAACCTGAGCGGTCCGGATTCA
TCAGGGGTGCTGAGGACAAGGCAGGCCCGATTAGACAGTCCACTCAGCAACCGCTATGCAGGAGACTGGA
GCAGCTGTGGGGAGAGCTACTCTTTAAATACAAGAGGAAATGTCAAGAATTTGGACTATGATGACGGCCC
CTTAGAAGGTGGAGAAAGTAGACAGTATAGCAAAACAGCCGGAGCGGAAGTCATGACCGCACAACGAATC
CCCATGTCAGGGGGGTGCACGTTTCAGACGTACTTGACGGTACAGACCATTGAATCCACGGTGGATCAGA
AAGCTAACCTCAGAGATTTGCAAGAGAGCATTGATACTTTGATTGGCAATCTGGAACGTGAGCTCAACAA
AAACAAGCTGAACATGAGTGTTTGA

Translation (1314 aa):
MAEPLRRTLGRLRERHAPGALGLHADSVAASLSEGRSPPHELAGPGMERPAWGTEQPGARVPWSRGAQEA
AALGRALARASPGAWGSGDDDGEDEGADYYENLPAGCAPEGAEALRASPSRAPGSSPGMEGGRLETGRLQ
TQLREAYYLLIQAMHDLPPDSGTRRGGPAGARAQGQQPPLPRGAAVRPACSLRGGDRPPQQVSPPRSPPT
ESREGRPPSPRIQLSSCRSLESLRVSRRPPLLQRWASDSCIRCGAHRDRDEPQPRGGGMDGWSPGSHRAA
TSAALLPPICHDPSGSSGRPFKDPVGTSVISSSQEDHPEDLPLKPPAVTVKKLQKWMYKGRLLSLGMKGR
DRGTAPKVPGAQTTSPNLGSWKVHENHVLSVTTDQRITLTDLFENVYGSPLKKREPEDVRGPAELRGHQP
LNNITVSKKRNWLYQSTLRSQSLDESKRSQDRRYFSLSPVSPPKHWVSHRPHCTHAVCNAARATLSRNGS
SAFSEDNDADDEGEIWYNPIPEDDSLGIAHVLSLEEANTAALKLPVSMLSARDLMKAEPPSEDRGDVQTS
QSNGINSADSMHSTEIMQHCKQRLGHRTQESPTAEDSPVLKSASTGPGIIVSTNRTELRAMEPSSPSPSP
GKKGSSITWSLPDKIKSPRTVRKLSMKMKRLPEFSRKLGARGALHYVNNPDSTPPLSKWNCREIPQGVTL
TSGNTTRNVISRYHLDTTVSSRHSYRKKPLGSSKYSCKGGYLSDGDSPELRTRSSKHGSEHKLGKGRETV
PSSCSKNELDIGAFRHYSFADQPKCSQYISGLMSVHFYGAEGLKPPRIDSKDVFCAIQVDSVNKARTALL
TCRTTFLDMDHTFNIEIENAQHLKLVVFSWEPTPRRNRVCCHGTVVLPALFRVTKTHQLAVKLEPRGLIY
VKVTLMEQWENSLHGLDKNREAVMFGVDIQKVVEKENVGLMVPLLIQKCIVEIEKRGCQVVGLYRLCGSA
AVKKELREAFEKDSKTVGLCENQYPDINVITGVLKDYLRELPSPLITKQLYEAVLDAMAKSPLKMSSSGC
ENEPSDSRLTVDLLDCLPDVEKATLKMLLDHLKLVASYHEVNKMTCQNLAVCFGPVLLNQRQEASTHNNR
VFTDSEELASALDFKKHIEVLHYLLQLWPVQRLTVKEPRDSLCLEQSSSLNYLRRKKERPCVLNLSGPDS
SGVLRTRQARLDSPLSNRYAGDWSSCGESYSLNTRGNVKNLDYDDGPLEGGESRQYSKTAGAEVMTAQRI
PMSGGCTFQTYLTVQTIESTVDQKANLRDLQESIDTLIGNLERELNKNKLNMSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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