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Report for CCDS49677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49677.1 Public Mus musculus 15 Chadl 23 108 98 CCDS HistoryNCBI Gene:214685Re-query CCDS DB by CCDS ID:49677.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49677.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072910.5 ENSMUSP00000072682.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072910.5Link to Ensembl Protein Viewer:ENSMUSP00000072682.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072910Re-query CCDS DB by Protein ID:ENSMUSP00000072682
Original member Current member NCBI NM_001164320.1 NP_001157792.1 Accepted alive Link to Nucleotide Sequence:NM_001164320.1Link to Protein Sequence:NP_001157792.1Re-query CCDS DB by Nucleotide ID:NM_001164320Re-query CCDS DB by Protein ID:NP_001157792Link to BLAST:NP_001157792.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157792.1 748 E9Q7T7 748 100% 0 0

Chromosomal Locations for CCDS 49677.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 81692120 81692306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81692987 81693153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81693534 81695243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81695850 81696024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 81697229 81697236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2247 nt):
ATGGAGAGGCCCCAGAGCTCCATCTGGGTCTTTATGCTGTTGCTGTTCATGGTGTTGCTCCAGAGCCCAG
CC
TGGCACGTAGCTGCCCAGCGATGCCCACAGACCTGTGTCTGCGACAACTCAAGACGGCATGTTACCTG
C
CGGCACCAGAACCTCACCGAGGTGCCAAACACCATCCCTGAGCTGACCCAGAGGCTGGACCTCCAGGGC
AAT
ATACTGAAGGTCCTCCCTGCAGCGGCCTTCCAGGACCTGCCCCACCTCACGCATCTGGACCTGCGGA
AC
TGTCAGGTGGAGATGGTGGCCGAGGGTGCCTTCCGTGGCCTGGGTCGCCTGCTCCTCCTCAACCTGGC
T
TCCAACCGCCTGAGCACCCTGCCCCAGGAGGCGCTGGACGGGCTGGGCTCGCTGAGGCGCCTGGAGCTG
GAG
GGGAACATGTTGGAGGAGCTGCGCCCGGGGACCTTCGGCGCCCTGGGCTCGCTGACCACTCTCAACT
TG
GCCCACAACGCCCTGGTCTACCTGCCCGCCATGGCCTTCCAGGGGCTGCTGCGCACCCGCTGGCTGCA
G
CTGTCTCACAATGCGCTCAGCGTCCTGGCCCCCGAGGCTCTGGCCGGCCTGCCGGCGCTGCGCCGTCTC
AGC
CTGCACCACAACGAGCTGCAGGCCCTGCCCGGGGCCGCCCTGTCCCAGGCCCGCAGCCTGGCGCGGC
TG
GAGCTGGGTCACAACCCGCTCACCTACACGGGAGAGGAGGACGGCCTGGCGCTGCCCGGCCTGCGGGA
G
CTCGCACTGGACCACGGGTCCCTGCAGGCCCTGGGGCCCCGGGCCTTCGCCCACTGCCCGCGCCTGCAC
ACC
CTCGACCTCCGCGGGAACCAGCTCACCACCCTGCCCCCGCTACAGGTCCCCGGCCAGCTGCGCCGCC
TG
CGGCTGCAGGGCAACCCGCTGTGGTGCGCCTGCCACGCACGGCCCCTGCTCGAGTGGCTGGTGCGCGC
T
CGGGTGCGCTCGGATGGCGCGTGCCGGGGCCCGCGGCGCCTGCGAGGCGAGGCCCTGGATACGCTGCGG
CCC
TCTGACCTGCGCTGCCCGGGCGACGCGGCGGCGGGGGACGGGGATGGGGACGAGGACGAGGACCGGC
CG
GCCGGTCCCCGCGCTCCTCCTCTTCGCTCCCCGCACGGAGAGGCCGCGTGGGCCACGCCCTGCCCTCC
A
GCCTGCGCGTGCGTCGCCGAGACCCGGCACAGCACTTGCGACGGCCGCGGCCTGCAGGCCGTGCCCCGC
GGC
TTCCCCAACGACACCCAGCTCCTGGACCTGAGGCGCAACCACTTCCCCTCGGTGCCCCGCGCGGCCT
TC
CCGGGCTTGCGCCACTTGGTGTCGCTGCACCTGCAGCACTGCGGCGTCGCGGAGCTGGAGCCCGGCGC
C
TTGGCCGGCCTGGACCGCCTGCTCTATCTCTACCTCTCCCACAACCAGCTCTCGGGCCTGAGCGCCGCC
GCC
CTCGAAGGGGCCCCCAACCTGGGCTACCTGTACCTGGAGCACAACCGCTTCCTGAGGATCCCGGGGA
CC
GCTCTGCGGGCCCTACCCACCCTTGTCTCGCTACACCTCCAGGACAACGCGGTGGACCGCCTGGCGCC
C
GGGGATCTGGCAGGAGCGCGGGCTTTGCGCTGCCTTTACCTGAGTGGCAATCACATCACCCAGGTTTCA
CCC
GGGGCGCTCGGTCCAGCGCGGGAGCTGGAGAAGCTGCACCTCGACAGAAACCGGCTGCGAGAGGTGC
CG
ACTGGAGCCTTGGAGGGGCTGCCGGCGCTCAAGGAGCTGCAGCTCTCGGGGAACCCGCTCCGGGCTCT
T
CCAGACGGCGCCTTTCAGCCCGTGGGGCGGTCGCTGCAGCAGCTCTTCCTGAATAGCAGTGACCTGGAG
CAG
ATTTCTCCCAGGGCCTTCTCAGGCCTGGGAAAAGGGCTGCGGAGCTTGTACCTGCACAAGAATCAAC
TT
CAGTCCCTGCCTGCCCCGCTGGGGCTCAGCGGGCTGGAGCTGGTCGACCTCAGCGGTAATCCTTTCCA
C
TGTGACTGCCAGCTGCTCCCGCTGCACAGGTGGCTCACTGGGCTGAACCTGCGGGTGGGTGCCACCTGT
GCC
ACCCCTCCCAGTGTCCGTGGCCAGAAGGTGAAGGTTGCAGCTCCTGTCTTTGAAGCCTGCCCAGGCT
GG
ACTGCCAGGAAGGCCAAGAGGACACCAACCTCCAGAGGCAGTGCCAGGAGAACTCCCAGCCTCAGCCG
A
CATTGA


Translation (748 aa):
MERPQSSIWVFMLLLFMVLLQSPAWHVAAQRCPQTCVCDNSRRHVTCRHQNLTEVPNTIPELTQRLDLQG
N
ILKVLPAAAFQDLPHLTHLDLRNCQVEMVAEGAFRGLGRLLLLNLASNRLSTLPQEALDGLGSLRRLEL
E
GNMLEELRPGTFGALGSLTTLNLAHNALVYLPAMAFQGLLRTRWLQLSHNALSVLAPEALAGLPALRRL
S
LHHNELQALPGAALSQARSLARLELGHNPLTYTGEEDGLALPGLRELALDHGSLQALGPRAFAHCPRLH
T
LDLRGNQLTTLPPLQVPGQLRRLRLQGNPLWCACHARPLLEWLVRARVRSDGACRGPRRLRGEALDTLR
P
SDLRCPGDAAAGDGDGDEDEDRPAGPRAPPLRSPHGEAAWATPCPPACACVAETRHSTCDGRGLQAVPR
G
FPNDTQLLDLRRNHFPSVPRAAFPGLRHLVSLHLQHCGVAELEPGALAGLDRLLYLYLSHNQLSGLSAA
A
LEGAPNLGYLYLEHNRFLRIPGTALRALPTLVSLHLQDNAVDRLAPGDLAGARALRCLYLSGNHITQVS
P
GALGPARELEKLHLDRNRLREVPTGALEGLPALKELQLSGNPLRALPDGAFQPVGRSLQQLFLNSSDLE
Q
ISPRAFSGLGKGLRSLYLHKNQLQSLPAPLGLSGLELVDLSGNPFHCDCQLLPLHRWLTGLNLRVGATC
A
TPPSVRGQKVKVAAPVFEACPGWTARKAKRTPTSRGSARRTPSLSRH




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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