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Report for CCDS24371.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24371.1 Public Mus musculus 11 Tcn2 23 108 98 CCDS HistoryNCBI Gene:21452Re-query CCDS DB by CCDS ID:24371.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24371.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020710.10 ENSMUSP00000020710.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020710.10Link to Ensembl Protein Viewer:ENSMUSP00000020710.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000020710Re-query CCDS DB by Protein ID:ENSMUSP00000020710
Original member Current member EBI ENSMUST00000109988.1 ENSMUSP00000105615.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109988.1Link to Ensembl Protein Viewer:ENSMUSP00000105615.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109988Re-query CCDS DB by Protein ID:ENSMUSP00000105615
Original member Current member EBI ENSMUST00000109989.9 ENSMUSP00000105616.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109989.9Link to Ensembl Protein Viewer:ENSMUSP00000105616.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109989Re-query CCDS DB by Protein ID:ENSMUSP00000105616
Original member Current member EBI ENSMUST00000109990.7 ENSMUSP00000105617.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109990.7Link to Ensembl Protein Viewer:ENSMUSP00000105617.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109990Re-query CCDS DB by Protein ID:ENSMUSP00000105617
Original member Current member EBI ENSMUST00000109991.7 ENSMUSP00000105618.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109991.7Link to Ensembl Protein Viewer:ENSMUSP00000105618.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109991Re-query CCDS DB by Protein ID:ENSMUSP00000105618
Original member Current member EBI ENSMUST00000109992.7 ENSMUSP00000105619.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109992.7Link to Ensembl Protein Viewer:ENSMUSP00000105619.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109992Re-query CCDS DB by Protein ID:ENSMUSP00000105619
Original member Current member EBI ENSMUST00000109993.8 ENSMUSP00000105620.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109993.8Link to Ensembl Protein Viewer:ENSMUSP00000105620.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109993Re-query CCDS DB by Protein ID:ENSMUSP00000105620
Original member Current member NCBI NM_001130458.1 NP_001123930.1 Accepted alive Link to Nucleotide Sequence:NM_001130458.1Link to Protein Sequence:NP_001123930.1Re-query CCDS DB by Nucleotide ID:NM_001130458Re-query CCDS DB by Protein ID:NP_001123930Link to BLAST:NP_001123930.1
Original member Current member NCBI NM_001130459.1 NP_001123931.1 Accepted alive Link to Nucleotide Sequence:NM_001130459.1Link to Protein Sequence:NP_001123931.1Re-query CCDS DB by Nucleotide ID:NM_001130459Re-query CCDS DB by Protein ID:NP_001123931Link to BLAST:NP_001123931.1
Original member Current member NCBI NM_015749.3 NP_056564.1 Accepted alive Link to Nucleotide Sequence:NM_015749.3Link to Protein Sequence:NP_056564.1Re-query CCDS DB by Nucleotide ID:NM_015749Re-query CCDS DB by Protein ID:NP_056564Link to BLAST:NP_056564.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123930.1 430 O88968 430 100% 0 0
NP_001123931.1 430 O88968 430 100% 0 0
NP_056564.1 430 O88968 430 100% 0 0

Chromosomal Locations for CCDS 24371.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 3917648 3917709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3919290 3919405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3922011 3922176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3923396 3923582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3923702 3923874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3924941 3925102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3926000 3926169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3927390 3927582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 3931393 3931456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1293 nt):
ATGGAGCTCCTGAAGGCGCTGCTGCTCCTTTCTGGAGTCTTTGGGGCTCTTGCTGAATTCTGTGTAATAC
CACGGATAGACAGCCAGCTGGTAGAGAAGTTGGGTCAACGTCTTTTACCTTGGATGGATCGGCTTTCCTC
AGAGCAGTTGAACCCCAGCGTCTTCGTTGGCCTGCGACTTTCCAGCATGCAGGCTGGGACCAAAGAGGAC
CTCTACCTTCACAGCCTCAAGATCCATTACCAGCAGTGCCTCCTGCGGTCCACCTCCAGCGATGATAACA
GTAGTTGCCAGCCCAAACTTTCCGGGGGCAGCCTGGCGCTCTACCTGCTTGCTCTCAGGGCCAACTGCGA
ATTCTTCGGGAGCCGAAAGGGTGACAGGTTGATCTCACAGCTCAAGTGGTTCTTGGAGGATGAGAAGAAG
GCCATTGGGCACAATCATGAAGGCCACCCCAACACCAACTATTACCAGTATGGCCTCAGCATCCTGGCAC
TGTGTGTCCACCAGAAGCGGCTCCATGACAGCGTGGTGGGCAAGCTCCTGTATGCTGTTGAACATGACTA
CTTTACCTACCAGGGCCACGTCTCTGTGGACACAGAAGCCATGGCCGGCTTGGCCCTCACCTGTTTGGAG
CGATTCAATTTCAACTCTGATCTGAGACCACGAATCACCATGGCTATCGAGACAGTGCGAGAGAAAATCC
TGAAGTCCCAGGCCCCTGAGGGCTACTTTGGGAATATCTATAGCACCCCACTGGCACTACAGATGCTCAT
GACATCTCCTGCATCCGGGGTAGGGCTGGGCACAGCGTGCATCAAGGCAGGGACATCCCTGCTGCTCAGC
CTACAGGATGGGGCCTTCCAAAATCCTCTGATGATTTCCCAGCTGCTACCCATCCTGAACCACAAGACCT
ACTTGGATCTTATCTTCCCAGACTGCCAGGCATCCAGGGTCATGTTGGTGCCAGCTGTTGAGGACCCTGT
CCACATCTCAGAAGTCATCAGCGTCACGCTGAAGGTCGCCAGTGCCCTGTCACCATACGAACAGACATTT
TTTGTCTTTGCTGGATCTTCCTTGGAAGATGTCCTGAAGTTGGCACAAGATGGCGGAGGATTCACGTATG
GGACCCAGGCCTCCTTGTCAGGCCCCTACCTGACATCTGTACTAGGGAAAGATGCTGGGGACCGAGAATA
TTGGCAGCTCCTCCGAGCCCCTGACACACCCCTGCTGCAAGGCATTGCTGACTACAAACCCCAGGACGGG
GAAACCATTGAGCTGCGGCTAGTTAGATGGTAG

Translation (430 aa):
MELLKALLLLSGVFGALAEFCVIPRIDSQLVEKLGQRLLPWMDRLSSEQLNPSVFVGLRLSSMQAGTKED
LYLHSLKIHYQQCLLRSTSSDDNSSCQPKLSGGSLALYLLALRANCEFFGSRKGDRLISQLKWFLEDEKK
AIGHNHEGHPNTNYYQYGLSILALCVHQKRLHDSVVGKLLYAVEHDYFTYQGHVSVDTEAMAGLALTCLE
RFNFNSDLRPRITMAIETVREKILKSQAPEGYFGNIYSTPLALQMLMTSPASGVGLGTACIKAGTSLLLS
LQDGAFQNPLMISQLLPILNHKTYLDLIFPDCQASRVMLVPAVEDPVHISEVISVTLKVASALSPYEQTF
FVFAGSSLEDVLKLAQDGGGFTYGTQASLSGPYLTSVLGKDAGDREYWQLLRAPDTPLLQGIADYKPQDG
ETIELRLVRW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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