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Report for CCDS37454.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37454.2 Public Mus musculus 17 Tbp 23 108 98 CCDS HistoryNCBI Gene:21374Re-query CCDS DB by CCDS ID:37454.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 37454.1
The coding region has been updated to represent an alternate exon or splice site that is more supported by the available available conservation and protein data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37454.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000014911.11 ENSMUSP00000014911.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000014911.11Link to Ensembl Protein Viewer:ENSMUSP00000014911.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000014911Re-query CCDS DB by Protein ID:ENSMUSP00000014911
Original member Current member EBI ENSMUST00000117593.7 ENSMUSP00000112794.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117593.7Link to Ensembl Protein Viewer:ENSMUSP00000112794.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117593Re-query CCDS DB by Protein ID:ENSMUSP00000112794
Original member Current member EBI ENSMUST00000162505.7 ENSMUSP00000124317.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000162505.7Link to Ensembl Protein Viewer:ENSMUSP00000124317.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000162505Re-query CCDS DB by Protein ID:ENSMUSP00000124317
Original member Current member NCBI NM_013684.3 NP_038712.3 Accepted alive Link to Nucleotide Sequence:NM_013684.3Link to Protein Sequence:NP_038712.3Re-query CCDS DB by Nucleotide ID:NM_013684Re-query CCDS DB by Protein ID:NP_038712Link to BLAST:NP_038712.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038712.3 316 P29037 316 100% 0 0

Chromosomal Locations for CCDS 37454.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 15503075 15503128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15504274 15504647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15507343 15507430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15513530 15513621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15514230 15514397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15515616 15515710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 15516704 15516783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGACCAGAACAACAGCCTTCCACCTTATGCTCAGGGCTTGGCCTCCCCACAGGGCGCCATGACTCCTG
GAATTCCCATCTTTAGTCCAATGATGCCTTACGGCACAGGACTTACTCCACAGCCTATTCAGAACACCAA
CAGTCTCTCTATTTTGGAAGAGCAACAAAGACAGCAGCAGCAACAGCAACAGCAGCAGCAACAACAGCAG
GCAGTAGCAACTGCAGCAGCCTCAGTACAGCAATCAACATCTCAGCAACCCACACAGGGTGCCTCAGGCC
AGACCCCACAACTCTTCCATTCTCAAACTCTGACCACTGCACCGTTGCCAGGCACCACCCCCTTGTACCC
TTCACCAATGACTCCTATGACCCCTATCACTCCTGCCACACCAGCTTCTGAGAGCTCTGGAATTGTACCG
CAGCTTCAAAATATTGTATCTACCGTGAATCTTGGCTGTAAACTTGACCTAAAGACCATTGCACTTCGTG
CAAGAAATGCTGAATATAATCCCAAGCGATTTGCTGCAGTCATCATGAGAATAAGAGAGCCACGGACAAC
TGCGTTGATTTTCAGTTCTGGAAAAATGGTGTGCACAGGAGCCAAGAGTGAAGAACAATCCAGACTAGCA
GCAAGAAAATATGCTAGAGTTGTGCAGAAGTTGGGCTTCCCAGCTAAGTTCTTAGACTTCAAGATCCAGA
ACATGGTGGGGAGCTGTGATGTGAAGTTCCCTATAAGGCTGGAAGGCCTTGTGCTGACCCACCAGCAGTT
CAGTAGCTATGAGCCAGAATTATTTCCTGGATTAATCTACAGAATGATCAAACCCAGAATTGTTCTCCTT
ATTTTTGTTTCTGGAAAAGTTGTATTAACAGGTGCTAAAGTTAGAGCAGAGATTTATGAAGCATTTGAAA
ACATCTACCCCATCTTAAAGGGATTCAGGAAGACCACATAG

Translation (316 aa):
MDQNNSLPPYAQGLASPQGAMTPGIPIFSPMMPYGTGLTPQPIQNTNSLSILEEQQRQQQQQQQQQQQQQ
AVATAAASVQQSTSQQPTQGASGQTPQLFHSQTLTTAPLPGTTPLYPSPMTPMTPITPATPASESSGIVP
QLQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLA
ARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLL
IFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKTT


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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