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Report for CCDS18868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18868.1 Public Mus musculus 4 Arhgef19 23 108 98 CCDS HistoryNCBI Gene:213649Re-query CCDS DB by CCDS ID:18868.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18868.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006618.8 ENSMUSP00000006618.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006618.8Link to Ensembl Protein Viewer:ENSMUSP00000006618.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000006618Re-query CCDS DB by Protein ID:ENSMUSP00000006618
Original member NCBI NM_172520.2 NP_766108.1 Updated not alive Link to Nucleotide Sequence:NM_172520.2Link to Protein Sequence:NP_766108.1Re-query CCDS DB by Nucleotide ID:NM_172520Re-query CCDS DB by Protein ID:NP_766108
Current member NCBI NM_172520.3 NP_766108.1 Accepted alive Link to Nucleotide Sequence:NM_172520.3Link to Protein Sequence:NP_766108.1Re-query CCDS DB by Nucleotide ID:NM_172520Re-query CCDS DB by Protein ID:NP_766108Link to BLAST:NP_766108.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766108.1 802 Q8BWA8 802 100% 0 0

Chromosomal Locations for CCDS 18868.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141246204 141246609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141246949 141247230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141247378 141247486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141247554 141247630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141247847 141248109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141248987 141249147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141249227 141249379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141249566 141249695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141250563 141250637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141250728 141250817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141250944 141251104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141254290 141254448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141254701 141254780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141256304 141256408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141256722 141256879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2409 nt):
ATGGACTGTGGGCCACCTGCAACCCTCCAGCCTCACTTGGCTGGACCACCTGGCACCGCCCGTCGCCCAG
TAGCTGTGTGCCAGCAGGAGAGCCTGTCCTTCGTGGAGCTGCCTCCGAGCCGACTGTGTGTGGATCTCTT
TCCCATTGCTCCAGAGGAGCTGCAAGCTCCCGGTAGCCGCTGGTCCCTGGCAACCCCTGCCCCTCTCCAA
GGACTGTTATGGCCGACGTCCCCAGGAGGCCCAGATACCCATATCGCCTCCACCAGTGGAGGAATGAGAC
CCGGCAGGGCTGGCAGCTGGCCTCACTGTCCTGGTGCCCAGCCCCCAACTCTGGTGGAACCGTGGAGTTC
TCAGCACATGCAGCCCCAACGCAGGGCCAGCCACAGTGGCTCAGAGAAGTCAGCCTGGCGCAAGATGCAG
GTGTATCATAACGAAGAGGCCACCGGCACCGAGACCCCTACGGGCCTTCTGGAGACTGGCCAGGCTGCGC
AAGAGCAGGCTCTGTGTGCTCTAGAGCCCGGGCCCCAGGAGCTTTCTGGGAACGCCAGAGGGGGCCTTGA
GGCACCGGAGCGAAGGCGTTTCTCGGCCTCAGAGCTGATGACTAGGCTGCATTCCTCTCTGCGCTTGGGG
CGCAGCACTGCCACCAGGGTTCTGACCTCGGGCTCAGGTGCTGGAGCCATCCGGGAAGGGAAACTGCCCG
TGAGGGAATCCCGAAGAGCCGAGACAAGGGCGGACAGTGTGTCGCTTCCAGGACCCGTCGATCTAAACGA
GGTCCACGGTGGTCTGGTGGAACCCAGGCTGGACACGCAAGACAAGCCGACTCAGGATCCCAGCAGCGCC
ACTGAGAGGCGCCAGTCCCGCTTCCTCCTTAATTCTGTCCTCTACCAGGAGTACAGCGACGTGGCCAGCG
CGCGCGAGTTGCGGCGGCAGCAGCGTGAGGAGGAGGGCCCCGGGGACGGAGCGGAGGGCGCGGAGGAGGG
GCCCGGGCCACCGCGCGCCAACCTCTCCCCGAGCAGCTCTTTCCGCGCGCAACGCTCGACGCGGGGCTCC
ACCTTCTCGCTGTGGCAGGACATCCCCGACGTGCGCGGCAGTGGCGTCCTGGCCACGCTGAGCCTGCGCG
ACTGCAAGCTGCAGGAGGCCAAATTTGAGCTGATTACCTCGGAGGCCTCCTACATCCATAGCCTGTCGGT
GGCCGTGGGTCACTTCTTAGGTTCCGTGGAGCTGAGCGAGTGTCTGGGGACTCAGGACAAGCAGTGGCTA
TTTTCAAAACTGCCCGAGGTCAAGAGCACCAGTGAGAGGTTCCTTCACGACCTGGAGCAGCGTCTAGAGG
CCGATGTGCTGCGCTTCAGCGTGTGCGATGTGGTTCTACACCATTGCCCCGCATTCCGCCGAGTCTACCT
GCCTTACGTCACCAACCAGGCCTACCAGGAGCGCACCTACCAGCGCCTGCTCCTAGAGAACCCCAAGTTC
CCCGGCATCCTGGCTCGCCTAGAGGAGTCTCCTGTGTGCCAGCGGCTGCCTCTCACCTCCTTCCTCATCT
TACCGTTCCAGAGGGTTACCCGCCTCAAGATGCTGGTAGAGAACATTTTGAAGCGGACAGCACCGGGCTC
CCAAGATGAGGACATGGCCACCAAGGCCTTCAGCGCTCTAAAGGAGCTGGTGCAGGAGTGCAACGCGAGC
GTGCAGTCCATGAAGCGGACGGAGGAACTAATTCACCTAAGCAAGAAGATCCATTTTGAGGGCAAGATCT
TCCCGCTGATCTCACAGGCCCGCTGGCTGGTCCGGCACGGGGAGCTGGTGGAGTTGGCCCCCCTGCCCGC
CGCACCGCCAGCCAAACTGAAGCTGTCCAGCAAGGCCGTGTACCTTCACCTCTTCAATGACTGCCTGCTG
CTGTCCCGGAGGAAGGAGCTCGGGAAGTTTGCCGTTTTTGTCCATGCCAACATGGCTGAGCTACAGGTTC
GAGACCTCAGCCTGAAGCTCCAGGGCATCCCAGGCCATGTGTTCCTGCTCAGGCTGCTGCACGGGCAGCG
CGCCAGGCACCAGCTGCTGCTGAGAGCACGGACCGAAAGTGAGAAGCAACGGTGGATTTCAGCCTTGAGA
CCATCCAGCCCCCAGGAGGACAAGGAGATCACATGTGATGGGGAAGACCGACCCCAGGTCCAGTGTGTGA
GGACCTACAAGGCCCTGCAGCCAGATGAACTCACCTTGGAGAAGACAGACATCCTGGCAGTGAAGACCAG
GACCAGCGATGGCTGGCTGGAGGGCGTGCGCCTGGCCGATGGTGAGAAGGGATGGGTGCCTCAGGCCCAT
GTGGTGGAGATCAGCAGCCTCAGCGCTCGACTGCGCAACCTCAGAGAGTACAAGAGGGTCTCCAACGCCA
GCAGCAAGCTGGGGGACCCACCTGCCTGA

Translation (802 aa):
MDCGPPATLQPHLAGPPGTARRPVAVCQQESLSFVELPPSRLCVDLFPIAPEELQAPGSRWSLATPAPLQ
GLLWPTSPGGPDTHIASTSGGMRPGRAGSWPHCPGAQPPTLVEPWSSQHMQPQRRASHSGSEKSAWRKMQ
VYHNEEATGTETPTGLLETGQAAQEQALCALEPGPQELSGNARGGLEAPERRRFSASELMTRLHSSLRLG
RSTATRVLTSGSGAGAIREGKLPVRESRRAETRADSVSLPGPVDLNEVHGGLVEPRLDTQDKPTQDPSSA
TERRQSRFLLNSVLYQEYSDVASARELRRQQREEEGPGDGAEGAEEGPGPPRANLSPSSSFRAQRSTRGS
TFSLWQDIPDVRGSGVLATLSLRDCKLQEAKFELITSEASYIHSLSVAVGHFLGSVELSECLGTQDKQWL
FSKLPEVKSTSERFLHDLEQRLEADVLRFSVCDVVLHHCPAFRRVYLPYVTNQAYQERTYQRLLLENPKF
PGILARLEESPVCQRLPLTSFLILPFQRVTRLKMLVENILKRTAPGSQDEDMATKAFSALKELVQECNAS
VQSMKRTEELIHLSKKIHFEGKIFPLISQARWLVRHGELVELAPLPAAPPAKLKLSSKAVYLHLFNDCLL
LSRRKELGKFAVFVHANMAELQVRDLSLKLQGIPGHVFLLRLLHGQRARHQLLLRARTESEKQRWISALR
PSSPQEDKEITCDGEDRPQVQCVRTYKALQPDELTLEKTDILAVKTRTSDGWLEGVRLADGEKGWVPQAH
VVEISSLSARLRNLREYKRVSNASSKLGDPPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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