NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS52444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52444.1 Public Mus musculus 7 Gatd1 23 108 98 CCDS HistoryNCBI Gene:213350Re-query CCDS DB by CCDS ID:52444.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52444.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106008.2 ENSMUSP00000101630.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106008.2Link to Ensembl Protein Viewer:ENSMUSP00000101630.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106008Re-query CCDS DB by Protein ID:ENSMUSP00000101630
Original member Current member NCBI NM_172116.4 NP_742114.3 Accepted alive Link to Nucleotide Sequence:NM_172116.4Link to Protein Sequence:NP_742114.3Re-query CCDS DB by Nucleotide ID:NM_172116Re-query CCDS DB by Protein ID:NP_742114Link to BLAST:NP_742114.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742114.3 220 Q8BFQ8 220 100% 0 0

Chromosomal Locations for CCDS 52444.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141408958 141408964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141409089 141409200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141409331 141409424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141409846 141409940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141410778 141410885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141410986 141411091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141411798 141411874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141414002 141414065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (663 nt):
ATGGCGTCCGAGCGGCTGCCAAGCAGGCCTGCGTGTCTCCTGGTGGCCAGCGGCGCTTCCGAAGGTGTGT
CAGCCCAGTCCTTCGTCCACTGTTTCACACTGGCCAGTGCTGCCTTCAACCTACAGGTGGCCACCCCAGG
GGGAAAGGCCATTGACTTTGTGGATGTGACTGAGAGCAATGCCCGATGGGTACAAGACTTCCGCCTCAAG
GCATACGCCAGTCCTGCTAAGCTTGAGTCCATAGATGGTGCCCGGTACCATGCCCTCCTGATTCCCAGCT
GTCCTGGCGCCCTGACAGATCTTGCCAGCAGTGGGTCCCTGGCTCGAATACTGCAGCACTTCCGCTCTGA
GAGCAAACCCATCTGCGCCATTGGCCATGGTGTTGCTGCCCTGTGCTGTGCTACCAATGAAGATAGGTCC
TGGGTGTTCCAGGGCTACAGTCTGACAGGGCCTTCAGTGTACGAGCTCATCAGAGCACCTGGCTTTGCCC
GCCTACCATTGATCGTTGAGGACTTTGTGAAGGACTCTGGTGCTGGCTTCAGTGCCAGTGAGCCCGACGC
TGTGCACGTGGTGCTGGACCGCCATCTGGTCACTGGCCAGAACGCTAACTCCACAGTTCCTGCTGTCCAG
AACCTGCTCTTCCTCTGCGGCAGCCGGAAGTAA

Translation (220 aa):
MASERLPSRPACLLVASGASEGVSAQSFVHCFTLASAAFNLQVATPGGKAIDFVDVTESNARWVQDFRLK
AYASPAKLESIDGARYHALLIPSCPGALTDLASSGSLARILQHFRSESKPICAIGHGVAALCCATNEDRS
WVFQGYSLTGPSVYELIRAPGFARLPLIVEDFVKDSGAGFSASEPDAVHVVLDRHLVTGQNANSTVPAVQ
NLLFLCGSRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH