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Report for CCDS23992.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23992.1 Public Mus musculus 10 Misp 23 108 98 CCDS HistoryNCBI Gene:78906Re-query CCDS DB by CCDS ID:23992.1Re-query CCDS DB by GeneID:78906See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23992.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046833.4 ENSMUSP00000048893.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046833.4Link to Ensembl Protein Viewer:ENSMUSP00000048893.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000046833Re-query CCDS DB by Protein ID:ENSMUSP00000048893
Original member Current member EBI ENSMUST00000169041.8 ENSMUSP00000130071.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169041.8Link to Ensembl Protein Viewer:ENSMUSP00000130071.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169041Re-query CCDS DB by Protein ID:ENSMUSP00000130071
Original member Current member EBI ENSMUST00000219305.1 ENSMUSP00000151529.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219305.1Link to Ensembl Protein Viewer:ENSMUSP00000151529.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219305Re-query CCDS DB by Protein ID:ENSMUSP00000151529
Original member Current member NCBI NM_030218.2 NP_084494.1 Accepted alive Link to Nucleotide Sequence:NM_030218.2Link to Protein Sequence:NP_084494.1Re-query CCDS DB by Nucleotide ID:NM_030218Re-query CCDS DB by Protein ID:NP_084494Link to BLAST:NP_084494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084494.1 648 Q9D279 648 100% 0 0

Chromosomal Locations for CCDS 23992.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79825751 79827434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79827878 79828011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79829393 79829431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79830011 79830100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGATCGAGTGACCAGATACCCCATCTTCAGCAACCCCCGCTCAGCACGTGTCACCAGCTTGGTACTGG
ATGAAGATACCAGCTACACCGTTGAGCTAGTGGGCGTGGGGCCTGAGGCTGGTTGGAGCCAGGGTGATCT
GCAGGCCTGGTCCACTGAGTACCAGACCAGACCAGATGTAAAGAGAACAAACGTGTCTTCCAACAGACGC
GTCTTCCTTGGCCAGCAGTCCCCGAGGTCACTGTACTTGGAAGATGAGGATGAGGAGATAAAGTCTTATC
ACCTGGACGACAGCAGTGACACCCTCTGCAGGCAGCGGAGGGAGCTGGAGGCTGAGCGCTGGGCAGTCAT
CCAGAGCCAGGCAGTCAGGAAAGGTGGCACAGTGGCCACACTCCAGGCTGCATCAGACCATGGGGACCTC
AGGATTGCCAGACAACCTCAGTCCACAGTCACAGAGGAGATCTTGGTGGACACGGAGCAAATTGATTTCC
TGGCTGCTCGACAGCAATTCCTGAGCTTAGAAAAGGCAAACACAAACCCGGTCCCCTGCGGCCTCACAGC
CAGGGAGACCTTCCCACGAACCCCACCAGGCATCAACCAAGCCCCCAAGGCTTCCACTGGGCCCCACCTA
GCCAATGGCTATACCACTGCCGTCACGTCACCAATGAAGGAAGTGACCCTGGAGAAGTCTTTCCATGTTT
CCCCAGCTAGATCCATCCATATAGTCAATGATCCTGGCAGTCAGACCCAGGCAGAATCCCCTGAGACCCC
CAAAGAGACGCCCATCGAGAGAGAGATCAGGCTGGCCCAGGAGCGAGAGGCAGAGCTGAGGGAGCAGAGA
GGGCTTGGGCGAGCTGCCGGGCATCAAGAGCTGGTACAGATCCCCAGCAGGCCACTGCTCAGCAAGATGA
GCTTGACAGAGACACCTCCACGAAGAGACAGGGGCCGCCCATCCCTCTATGTGCAAAGGGACATGGTGCA
AGAGACACAGCGGGAAGAAGATCATCGACGAGAGGGGCTGCAGGTGGGCAGGGCATCCACACCTGACTGG
CCTTCCCAGGACCCTCAGCCTGGGCTCCAGAGAAGCCTGAGCTCCGATTGCATCCTCAGCCCAGATGCCC
GAGCCACAGACCCGGCTCCAGAGGCAAGGAAAGTCAACCGGATCCCACTGGATGCCTACCAGCCATATCT
AGGCCCTGGGACCCCTAAACTAGAATTCTCAGCCTTTGGAGTATACAGCAAGCCAAGTGGTGTCTCCACC
GAAGACACCAAAGCCACAGTCTTCCAGAAGGCCACGGAGTCTCCAAGGCATGTCTCAGAATCCTCCGGCA
GATCGCTGAGCTCAAAGCAAGAGTGGTCCAAGCCTCCTGGAAAAGCTACCAACGTGGGTGTGGTGAGATT
AGGGAATTTCCACCTGCGTCCACTGCGATTCAAGGTCCCAGATGTCCCCCAGGGGACTGAGACCCCCCAT
ACCTGGGGCTGGGAAGTGGCTGGAGGCCCCATATTGAGGCTACAAAAGTCACAGTCATCTGACCTGCTGG
AGAGGGAAATGGAGAGTGTCCTGCGGAGGGAGCGGGAGGTGGCTGAAGAGCGGAGGAATGCTTTCTTCCC
AGAGGTGTTCTCCCCAGTGCCAGCCGAGGATGAGAGCCATGAGCAAGACTCCCGGAGTTCCTCCCGGGCA
TCTGGCATCACTGGCAGCTATTCAGTGTCAGAATCACCACTCTTCACCCCCGTCCACCTGAATTCGGGGC
TGGTGTGGAAGGTGGAGGCCCCTGAGGACAGTGCTCCCCCAGGGCAGAAGACTAGGAAGGAGATGTGGTA
TGCAGGTATCAACCCCTCAGACAGTGTCAACTCAGAGGTCCTGGGAGCCACAAGGGTAAAGCGGCACAAG
AATCTCTTGGCGGAACGCTGGGAAGCACACATCTATGCCAGCGAGGATGAAAACTGA

Translation (648 aa):
MDRVTRYPIFSNPRSARVTSLVLDEDTSYTVELVGVGPEAGWSQGDLQAWSTEYQTRPDVKRTNVSSNRR
VFLGQQSPRSLYLEDEDEEIKSYHLDDSSDTLCRQRRELEAERWAVIQSQAVRKGGTVATLQAASDHGDL
RIARQPQSTVTEEILVDTEQIDFLAARQQFLSLEKANTNPVPCGLTARETFPRTPPGINQAPKASTGPHL
ANGYTTAVTSPMKEVTLEKSFHVSPARSIHIVNDPGSQTQAESPETPKETPIEREIRLAQEREAELREQR
GLGRAAGHQELVQIPSRPLLSKMSLTETPPRRDRGRPSLYVQRDMVQETQREEDHRREGLQVGRASTPDW
PSQDPQPGLQRSLSSDCILSPDARATDPAPEARKVNRIPLDAYQPYLGPGTPKLEFSAFGVYSKPSGVST
EDTKATVFQKATESPRHVSESSGRSLSSKQEWSKPPGKATNVGVVRLGNFHLRPLRFKVPDVPQGTETPH
TWGWEVAGGPILRLQKSQSSDLLEREMESVLRREREVAEERRNAFFPEVFSPVPAEDESHEQDSRSSSRA
SGITGSYSVSESPLFTPVHLNSGLVWKVEAPEDSAPPGQKTRKEMWYAGINPSDSVNSEVLGATRVKRHK
NLLAERWEAHIYASEDEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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